View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14393_low_9 (Length: 443)
Name: NF14393_low_9
Description: NF14393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14393_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 443
Target Start/End: Complemental strand, 38121372 - 38120944
Alignment:
| Q |
15 |
taattcttggcttttcacatacggctattacgtgtgaatgaatttctagatcaaacacttatcggatgttgtacctactactgaagctggagataaattt |
114 |
Q |
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| T |
38121372 |
taattcttggcttttcacatatggctattacgtgtgaatgaatttctagatcaaacacttatcggacgttgtacctactactgaagctggagataaattt |
38121273 |
T |
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| Q |
115 |
ctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagtatttagttttctcacgtggtcttgaacatatatacactactgtaagaaacttga |
214 |
Q |
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| T |
38121272 |
ctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagtatttagttttctcacgtggtcttgaacatatatacactactgtaagaaacttga |
38121173 |
T |
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| Q |
215 |
aggtattattaatctaatcatttatttaaaccttaacgcacggtactgtatgccataaaagaacactcatggcttcatttgattaatatcatgtacttta |
314 |
Q |
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| T |
38121172 |
aggtattattaatctaatcatttatttaaaccttaacgcacggtactgtatgccataaaagaacactcatggcttcatttgattaatatcatgtacttta |
38121073 |
T |
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| Q |
315 |
ttttgatctaggatgatttgggacgttataaaccacatttaatggtttctgttcctttagtttttgaaactttatacaggtaactccttttctcaggaat |
414 |
Q |
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| T |
38121072 |
ttttgatctaggatgatttgggacgttataaaccacatttaatggtttctgttcctttagtttttgaaactttatacaggtaactccttttctcaggaat |
38120973 |
T |
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| Q |
415 |
tgtaagaagaatatagtttgttctattta |
443 |
Q |
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| T |
38120972 |
tgtaagaagaatatagtttgttctattta |
38120944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 38133277 - 38133137
Alignment:
| Q |
95 |
ctgaagctggagataaatttctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagtatttagttttctcacgtggtcttgaacatatata |
194 |
Q |
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| T |
38133277 |
ctgaagttggggatagatttctaagtatgctgcctccttggcatgcatatgaaagagcttgtgagtatttcattttttcatgcggtgttgaccaagtata |
38133178 |
T |
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| Q |
195 |
cactactgtaagaaacttgaaggtattattaatctaatcat |
235 |
Q |
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| T |
38133177 |
tacaactgtgagaaacttgaaggtattattactttaatcat |
38133137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 35108501 - 35108573
Alignment:
| Q |
324 |
aggatgatttgggacgttataaaccacatttaatggtttctgttcctttagtttttgaaactttatacaggta |
396 |
Q |
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| T |
35108501 |
aggatgacttggggcgttaccaaccacattacatgatttctgttccattagtttttgaaacattatacaggta |
35108573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 35108147 - 35108213
Alignment:
| Q |
95 |
ctgaagctggagataaatttctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagta |
161 |
Q |
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| T |
35108147 |
ctgaagttggagacagatttcttagcatgctgccaccttggcatgcatacgaaagagcttgtgagta |
35108213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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