View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14394_high_1 (Length: 412)
Name: NF14394_high_1
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_high_1 |
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| [»] scaffold0017 (2 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 16345609 - 16345991
Alignment:
| Q |
20 |
atttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccac-tttaagtgtagtaattactatcaagctgc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16345609 |
atttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccacctttaagtgtagtaattactatcaagctgc |
16345708 |
T |
|
| Q |
119 |
cacatttaattctaaaaccattatgaaccagccccatttatcttcattggaaattgacctgaatggttgtgacatttaaaaatcacgttttgtttggtct |
218 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16345709 |
cacatttaattctaaaaccgttatgaaccagcctcatttatcttcattggaa-ttgacctgaatggttgtgacatttaaaaatcacgttttgtttggtct |
16345807 |
T |
|
| Q |
219 |
ttggtgagctagtaccaggaatcaaaataattctctactttggaaacaataaaaaccaacgaaattgtcccttgaggagcttgtgacttagtactccact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
16345808 |
ttggtgagctagtaccaggaatcaaaataattctctactttggaaacaataaaaaccaac-aaattgtcccttgagcagcttgtgacttagtactccact |
16345906 |
T |
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| Q |
319 |
tcatgtatcaaattatgcaatgatgaatcatagagatttaagccatgaatcttcaattagttaataccaaagcagagagaataat |
403 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16345907 |
tgatgtatcaaattatgcaatgatgaatcatagagatttaagccatgaatcttcaattagttaataccaaagcagtgagaataat |
16345991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 25 - 403
Target Start/End: Original strand, 22062490 - 22062869
Alignment:
| Q |
25 |
ttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccac-tttaagtgtagtaattactatcaagctgccacat |
123 |
Q |
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|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22062490 |
ttatcttcatttccaattgatgaaagctgctccaaacaaattccaaaaccgttgcaagctgccacctttaagtgtagtaattactatcaagctgccacat |
22062589 |
T |
|
| Q |
124 |
tt-aattctaaaaccattatgaaccagccccatttatcttcattggaaattgacctgaatggttgtgacatttaaaaatcacgttttgtttggtctttgg |
222 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
22062590 |
tttaattctaaaaccgttatgaaccagccccatttatcttcattg-aaattgacctgaatgattgtgacatttaaaaatcacgttttatttggtctttgg |
22062688 |
T |
|
| Q |
223 |
tgagctagtaccaggaatcaaaataattctctactttggaaacaataaaaaccaacgaaattgtcccttgaggagcttgtgacttagtactccacttcat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
22062689 |
tgagctagtaccaggaatcaaaataattctctactttggaaacaataaaaaccaacgaaattgtcccttgagcagcttgtgacttaatactccacttcat |
22062788 |
T |
|
| Q |
323 |
gtatcaaattatgcaatgatgaatcatagagatttaagccatgaatcttcaattagttaataccaaagcagagagaataat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
22062789 |
gtatcaaattatgcaatgatgaatcatagagatttaagccatgaatcttcaattagttaatatcaaagcagtgagaataat |
22062869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 18781563 - 18781305
Alignment:
| Q |
20 |
atttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccac-tttaagtgtagtaattactatcaagctgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
18781563 |
atttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccacctttaagtgtagtaattactatcaaactgc |
18781464 |
T |
|
| Q |
119 |
cacatttaattctaaaaccattatgaaccagccccatttatcttcattggaaattgacctgaatggttgtgacatttaaaaatcacgttttgtttggtct |
218 |
Q |
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|
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18781463 |
cacatttaattctaaaaccgttatgaaccagcctcatttatcttcattggaa-ttgacctgaatggttgtgacatttaaaaatcacgttttgtttggtct |
18781365 |
T |
|
| Q |
219 |
ttggtgagctagtaccaggaatcaaaataattctctactttggaaacaataaaaaccaac |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18781364 |
ttggtgagctagtaccaggaatcaaaataattctctactttggaaacaataaaaaccaac |
18781305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 156 - 403
Target Start/End: Original strand, 23736003 - 23736249
Alignment:
| Q |
156 |
ttatcttcattggaaattgacctgaatggttgtgacatttaaaaatcacgttttgtttggtctttggtgagctagtaccaggaatcaaaataattctcta |
255 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23736003 |
ttatcttcattggaa-ttgacctgattgattgtgacatttaaaaatcacgttttatttggtctttggtgagctagtaccaggaatcaaaataattcttta |
23736101 |
T |
|
| Q |
256 |
ctttggaaacaataaaaaccaacgaaattgtcccttgaggagcttgtgacttagtactccacttcatgtatcaaattatgcaatgatgaatcatagagat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23736102 |
ctttggaaacaataaaaaccaacgaaattgtcccttgaccagcttgtgacttaatactccacttcatgtatcaaattatgaaatgatgaatcatagagat |
23736201 |
T |
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| Q |
356 |
ttaagccatgaatcttcaattagttaataccaaagcagagagaataat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23736202 |
ttaagccatgaatcttcaattagttaataccaaagcagtgagaataat |
23736249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 15409073 - 15409006
Alignment:
| Q |
22 |
ttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccac |
89 |
Q |
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||||||||||| ||| ||||||||| || |||||||| |||||||||||||| | ||||||||||||| |
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| T |
15409073 |
ttgttatcttcttttccaattgatagaatctgctccatacaaattccaaaactgctgcaagctgccac |
15409006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 4927 - 4994
Alignment:
| Q |
22 |
ttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgccac |
89 |
Q |
| |
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||||||||||| ||| ||||||||| || |||||||| |||||||||||||||| ||||||||||||| |
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| T |
4927 |
ttgttatcttcttttccaattgatagaatctgctccatacaaattccaaaaccgctgcaagctgccac |
4994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 127 - 243
Alignment:
| Q |
22 |
ttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgcca-ctttaagtgtagtaattactatcaagctgcca |
120 |
Q |
| |
|
||||| ||||| ||| ||||||||| || |||||||| |||||||||||||| | |||||||||||| | |||| | | ||||||||||||||||||| |
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| T |
127 |
ttgttttcttcttttccaattgatagaatctgctccatacaaattccaaaactgctgcaagctgccaccattaaat---gcaattactatcaagctgcca |
223 |
T |
|
| Q |
121 |
ca---tttaattctaaaacc |
137 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
224 |
caccttttaattctaaaacc |
243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 136501 - 136387
Alignment:
| Q |
22 |
ttgttatcttcattttcaattgataaaaactgctccaaacaaattccaaaaccgttgcaagctgcc-actttaagtgtagtaattactatcaagctgcca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||| ||| ||| | ||||||||||| |||||| | |||||||||||||||||||| |
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| T |
136501 |
ttgttatcttcattttcaattgataaaagctggcccaaacaacttctgtaactgctgcaagctgcctcctttaaat---gtaattactatcaagctgcct |
136405 |
T |
|
| Q |
121 |
cattt-aattctaaaacc |
137 |
Q |
| |
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| ||| |||||||||||| |
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|
| T |
136404 |
cctttcaattctaaaacc |
136387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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