View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_high_11 (Length: 318)

Name: NF14394_high_11
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_high_11
NF14394_high_11
[»] chr3 (1 HSPs)
chr3 (10-300)||(51461843-51462133)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 51462133 - 51461843
Alignment:
Q  10 aagaatataagtacgttgaagtaaaagtttgtataaacattattagcaataactatagaagaattaagaatgttgcgatgacacagtataaacttttact 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  51462133 aagaatataagtacgttgaagtaaaagtttgtataaaaattattagtaatatttatagaagaattaagaatgttgcgatgacacggtataaacttttact 51462034  T
Q  110 tataaactcttgagtgacaaagaatgttgatattaaacataaacttttacttacgataccaacatcatattcaatgcaaaatgctctcatcttaatcaaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51462033 tataaactcttgagtgacaaagaatgttgatattaaacataaacttttacttacaataccaacatcatattcaatgcaaaatgctctcatcttaatcaaa 51461934  T
Q  210 tcatcacaaactacctttccaatatctccaccaacaatattctcctgaattgttttcattgacgagtagtttacaaattagataacattca 300  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51461933 tcatcacaaacaacctttccaatatctccaccaataatattttcctgaattgttttcattgatgagtagtttacaaattagataacattca 51461843  T

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