View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14394_high_12 (Length: 311)
Name: NF14394_high_12
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 38049453 - 38049178
Alignment:
| Q |
17 |
tacacagaaaagaattaactgatgtcattacnnnnnnnn-atttgtgattgtgtc-aaaagcaatatgcttaaggattacttgatgcttgtgtcaaatag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38049453 |
tacacagaaaagaattaactgatgtcattacattttttttatttgtgattgtgtccaaaagcaatatgcataaggattact--atgcttgtgtcaaatag |
38049356 |
T |
|
| Q |
115 |
ttaagtagcaaacataatgagattgagagatcgatctccactcttagaataatattaacaattaatactaacaatattaaggtaggaggggttgtatagt |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38049355 |
ttaagtagcaaacacaatgagattgagagatcgatctccactcttagaataatattaacaattaatactaacaatattaaggtaggaggggttgtatagt |
38049256 |
T |
|
| Q |
215 |
tcaactaattttgatctaagggtaagttgagaggaaaggagtatgaggaacgcgggtcagacctaatgtgagtaaaaat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
38049255 |
tcaactaattttgatctaagggtaagttgagaggaaaggagtatg-ggaacccgggtcagacctaatgggagtaaaaat |
38049178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University