View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14394_high_13 (Length: 309)
Name: NF14394_high_13
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 51239621 - 51239531
Alignment:
| Q |
199 |
agtatattagatgttacattaatacttttcttcaaaatgtaaactccaaaactttaacttctcaacctctttaaccatctccgcatacaag |
289 |
Q |
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| T |
51239621 |
agtatattagatgttacattaatacttttcttcaaaatgtaaactccaaaactttaacttctcaacctctttaaccatctccgcaaacaag |
51239531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 51239793 - 51239696
Alignment:
| Q |
9 |
gattattctaacaggtctaaaacaagtttattatccataatgactagcaaagacttaaa-atatcatagaaaagattcattataaaaaacaaaatctg |
105 |
Q |
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| T |
51239793 |
gattattctaataggtctaaaacaagtttattatccataatgactagcaaagacttaaagatatcatagaaaagattcattataaaaaacaaaatctg |
51239696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 38594722 - 38594632
Alignment:
| Q |
199 |
agtatattagatgttacattaatacttttcttcaaaatgtaaactccaaaactttaacttctcaacctctttaaccatctccgcatacaag |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38594722 |
agtatattagatgttacattaatacttttcttcaaaatgtaaactccaaaactttaacttctcaacctctttaaccatctccgcaaacaag |
38594632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 38594894 - 38594797
Alignment:
| Q |
9 |
gattattctaacaggtctaaaacaagtttattatccataatgactagcaaagacttaaa-atatcatagaaaagattcattataaaaaacaaaatctg |
105 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38594894 |
gattattctaataggtctaaaacaagtttattatccataatgactagcaaagacttaaagatatcatagaaaagattcattataaaaaacaaaatctg |
38594797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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