View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_high_23 (Length: 229)

Name: NF14394_high_23
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_high_23
NF14394_high_23
[»] chr3 (13 HSPs)
chr3 (17-217)||(8039167-8039380)
chr3 (59-188)||(25074781-25074915)
chr3 (122-177)||(20691322-20691377)
chr3 (101-188)||(24205022-24205108)
chr3 (128-217)||(15864795-15864885)
chr3 (128-188)||(1830335-1830395)
chr3 (128-170)||(3730172-3730214)
chr3 (17-51)||(8069254-8069288)
chr3 (75-188)||(10954944-10955056)
chr3 (60-113)||(21211360-21211413)
chr3 (128-181)||(34189426-34189479)
chr3 (128-188)||(8903424-8903483)
chr3 (139-183)||(16789668-16789712)
[»] chr7 (14 HSPs)
chr7 (83-182)||(7133235-7133339)
chr7 (73-179)||(12278836-12278941)
chr7 (129-169)||(23930230-23930270)
chr7 (128-188)||(38804562-38804622)
chr7 (128-188)||(43249985-43250045)
chr7 (121-188)||(32308112-32308179)
chr7 (103-170)||(41229280-41229347)
chr7 (121-183)||(5548673-5548735)
chr7 (138-188)||(24105670-24105720)
chr7 (121-170)||(4909161-4909210)
chr7 (128-169)||(18233605-18233646)
chr7 (128-188)||(4017801-4017861)
chr7 (92-188)||(21568593-21568689)
chr7 (128-180)||(38134413-38134465)
[»] chr6 (11 HSPs)
chr6 (73-191)||(34446554-34446677)
chr6 (121-188)||(9024176-9024243)
chr6 (128-187)||(6389736-6389795)
chr6 (131-188)||(19602191-19602248)
chr6 (128-180)||(12235526-12235578)
chr6 (128-188)||(17168470-17168530)
chr6 (128-187)||(12086352-12086411)
chr6 (121-188)||(19040344-19040411)
chr6 (123-188)||(13364707-13364772)
chr6 (128-188)||(26562681-26562741)
chr6 (122-170)||(34895035-34895083)
[»] chr4 (12 HSPs)
chr4 (129-188)||(20743286-20743345)
chr4 (127-181)||(31243554-31243608)
chr4 (131-188)||(7012058-7012115)
chr4 (128-188)||(24343499-24343559)
chr4 (129-191)||(5654599-5654661)
chr4 (123-180)||(18513243-18513300)
chr4 (83-132)||(944625-944674)
chr4 (123-180)||(7727961-7728018)
chr4 (134-191)||(10546137-10546194)
chr4 (129-182)||(32910549-32910602)
chr4 (127-188)||(34515880-34515941)
chr4 (128-188)||(16402218-16402278)
[»] chr1 (11 HSPs)
chr1 (73-188)||(19562568-19562688)
chr1 (122-188)||(36878453-36878519)
chr1 (128-188)||(17831538-17831598)
chr1 (121-185)||(25361881-25361945)
chr1 (57-188)||(22794015-22794145)
chr1 (127-182)||(40747779-40747834)
chr1 (129-180)||(42004955-42005006)
chr1 (129-182)||(6573987-6574040)
chr1 (121-170)||(7918211-7918260)
chr1 (128-188)||(398772-398832)
chr1 (122-170)||(3921677-3921725)
[»] chr2 (12 HSPs)
chr2 (128-185)||(10535766-10535823)
chr2 (128-185)||(24011031-24011088)
chr2 (119-179)||(18570973-18571033)
chr2 (129-188)||(12748676-12748735)
chr2 (123-170)||(34006993-34007040)
chr2 (128-170)||(11308011-11308053)
chr2 (130-188)||(19573970-19574028)
chr2 (138-188)||(21782835-21782885)
chr2 (128-170)||(25544491-25544533)
chr2 (74-188)||(37411198-37411311)
chr2 (121-170)||(44860330-44860379)
chr2 (128-180)||(23354659-23354711)
[»] chr5 (10 HSPs)
chr5 (60-188)||(32630675-32630802)
chr5 (80-166)||(26205714-26205805)
chr5 (121-188)||(28588674-28588741)
chr5 (131-188)||(42469213-42469270)
chr5 (73-188)||(21191009-21191123)
chr5 (128-170)||(31264448-31264490)
chr5 (135-188)||(2039863-2039916)
chr5 (134-182)||(2577193-2577241)
chr5 (135-187)||(4344735-4344787)
chr5 (121-169)||(21194205-21194253)
[»] chr8 (11 HSPs)
chr8 (73-180)||(30067981-30068087)
chr8 (121-170)||(3025561-3025610)
chr8 (128-188)||(44067508-44067568)
chr8 (121-188)||(13844596-13844663)
chr8 (128-190)||(28819181-28819243)
chr8 (128-170)||(28883885-28883927)
chr8 (101-170)||(39820439-39820507)
chr8 (135-191)||(7616863-7616919)
chr8 (121-185)||(11927086-11927150)
chr8 (134-170)||(18646182-18646218)
chr8 (128-188)||(31236584-31236644)
[»] scaffold0049 (1 HSPs)
scaffold0049 (121-170)||(56932-56981)
[»] scaffold0652 (1 HSPs)
scaffold0652 (73-185)||(415-526)
[»] scaffold0085 (1 HSPs)
scaffold0085 (128-170)||(26008-26050)
[»] scaffold0598 (1 HSPs)
scaffold0598 (131-188)||(8063-8120)
[»] scaffold0007 (1 HSPs)
scaffold0007 (128-188)||(225275-225335)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 8039380 - 8039167
Alignment:
Q  17 actttggtctagccaagtcaatgcttgattcttctacggcaagctatgaagtataaacactccttggattacgtgtgtcccagagtcggacacgcgtttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  8039380 actttggtctagccaagtcaatgcttgattcttctacggcaagctatgaagcataaacactccttggattaggtgtgtcccggagtcggacacgcgtttg 8039281  T
Q  117 tattcgacactg-----------acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc--tgtctagtgttcgtg 203  Q
    ||||||||||||           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  8039280 tattcgacactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtcggcgtgtctgtgtctagtgttcgtg 8039181  T
Q  204 tttgtgtctgtgct 217  Q
    ||||||||||||||    
T  8039180 tttgtgtctgtgct 8039167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 25074915 - 25074781
Alignment:
Q  59 gctatgaagtataaacactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacac-----ctatgattacactgaatcatg 153  Q
    ||||||||| |  ||||||||| |||||| ||||||||||| |||||||||||||| || |  ||||| |||||     ||||||||||||| ||| |||    
T  25074915 gctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatg 25074816  T
Q  154 ccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
     |||||||||||||||| ||| |||||||||||||    
T  25074815 tcattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 20691377 - 20691322
Alignment:
Q  122 gacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagt 177  Q
    ||||| ||||| |||||||||||||||| ||| |||||||||||||||| ||||||    
T  20691377 gacaccgacacatatgattacactgaattatgtcattttctcaaattattatcagt 20691322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 24205022 - 24205108
Alignment:
Q  101 gtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||||||||||  || | |||||| ||||| ||| ||||||||| || ||| |||||||||||||||| ||| |||||||||||||    
T  24205022 gtcggacacgcgtcagtgtccgacac-gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtc 24205108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 15864885 - 15864795
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc-tgtctagtgttcgtgtttgtgtctgtgct 217  Q
    |||||||||||||||||| ||| ||  |||||| ||||||||| ||| ||||||||||||| ||||  |||| ||||| |||||| |||||    
T  15864885 gacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtcgtgtccggtgtccgtgtctgtgtccgtgct 15864795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 1830395 - 1830335
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||||||||||||||||||| ||| |||||||| ||||||| |  ||||||||| ||||    
T  1830395 gacacctatgattacactgaattatgtcattttcttaaattattaaaagtgtcggcatgtc 1830335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 3730172 - 3730214
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||||||||||||| ||| |||| |||||||||||    
T  3730172 gacacctatgattacactgaattatgtcattatctcaaattat 3730214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 8069288 - 8069254
Alignment:
Q  17 actttggtctagccaagtcaatgcttgattcttct 51  Q
    ||||||||||||||||| |||||||||||||||||    
T  8069288 actttggtctagccaagccaatgcttgattcttct 8069254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 10955056 - 10954944
Alignment:
Q  75 actccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatcatc 174  Q
    |||||| |||||| | ||||||||| |||||||||| ||  || | |||||| ||||| | |||||||||||||| |||  ||||| ||||||||| |      
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagt 10954958  T
Q  175 agtgtcggcgtgtc 188  Q
     |||||||||||||    
T  10954957 tgtgtcggcgtgtc 10954944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 21211413 - 21211360
Alignment:
Q  60 ctatgaagtataaacactccttggattacgtgtgtcccagagtcggacacgcgt 113  Q
    |||||||| | |||||||||| |||||| | ||||||||| |||||||||||||    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgt 21211360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 34189479 - 34189426
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcg 181  Q
    |||||||| ||||||||||||  ||| |||||||||||||||| ||| ||||||    
T  34189479 gacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcg 34189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 8903483 - 8903424
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||| |||||||| ||| ||| |||||||||||| ||| ||| |||||||||||||    
T  8903483 gacacctataattacactaaat-atgtcattttctcaaaatattatccgtgtcggcgtgtc 8903424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 16789668 - 16789712
Alignment:
Q  139 ttacactgaatcatgccattttctcaaattatcatcagtgtcggc 183  Q
    ||||||||||| ||| |||||||||||||||| ||| ||||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcggc 16789712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 7133235 - 7133339
Alignment:
Q  83 gattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacac-----ctatgattacactgaatcatgccattttctcaaattatcatcagt 177  Q
    ||||| ||||||||||| |||||||||||||  || | |||||| |||||     ||||||||||||||||| ||| |||||||||||||||||||| ||    
T  7133235 gattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgt 7133334  T
Q  178 gtcgg 182  Q
    |||||    
T  7133335 gtcgg 7133339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 12278941 - 12278836
Alignment:
Q  73 acactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatca 172  Q
    |||||||| |||||| ||||||||| | ||| |||||||||| || | |||||| ||||| ||| |||||||||||| ||| |||||||| ||||||| |    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttcttaaattatta 12278843  T
Q  173 tcagtgt 179  Q
    |||||||    
T  12278842 tcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 23930270 - 23930230
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaatta 169  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  23930270 acacctatgattacactgaattatgtcattttctcaaatta 23930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 38804562 - 38804622
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||||||| ||| || ||| |||||||| ||||||| ||| |||||||||||||    
T  38804562 gacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgtgtc 38804622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 43250045 - 43249985
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| ||| ||||||||| || ||| |||||||||||||||| ||| |||||||||||||    
T  43250045 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtc 43249985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 32308179 - 32308112
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||||||||| ||  |||||||||||| |||  ||||||||||||||| | | |||||||||||||    
T  32308179 cgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 32308112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 41229280 - 41229347
Alignment:
Q  103 cggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||| || | |||||| ||| |||||||||| || |||| ||| ||||||||||||||||    
T  41229280 cggacacgcgttggtgtccgacaccgacgcctatgattatacagaattatgtcattttctcaaattat 41229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 5548735 - 5548673
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggc 183  Q
    |||||||||||| ||| |||||||||||| ||   ||||||||||||||||| | ||||||||    
T  5548735 cgacactgacacatataattacactgaattatttgattttctcaaattatcagcggtgtcggc 5548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 24105720 - 24105670
Alignment:
Q  138 attacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||||||||| ||||| ||||||||| | | |||||||||||||    
T  24105720 attacactgaatcatgcaattttttcaaattattagctgtgtcggcgtgtc 24105670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 4909210 - 4909161
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||| |||||||||| ||||| |||  |||||||||||||||    
T  4909210 cgacactgacacatatgattacaatgaattatgtaattttctcaaattat 4909161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 18233605 - 18233646
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaatta 169  Q
    ||||||||| |||||||||||| ||| |||||||||||||||    
T  18233605 gacacctataattacactgaattatgtcattttctcaaatta 18233646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 4017801 - 4017861
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| |||||||||||| ||| ||  | |||||||||||||| ||| |||||||||||||    
T  4017801 gacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtc 4017861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 21568593 - 21568689
Alignment:
Q  92 tgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||| | ||| |||||||||| |||| |||||| ||| | |||||||||||| ||| |||  ||||||| ||||||| | | ||||| |||||||    
T  21568593 tgtcccggtgtccgacacgcgttggtatccgacaccgactcatatgattacacttaattatgagattttcttaaattattagccgtgtcagcgtgtc 21568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 38134413 - 38134465
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtc 180  Q
    ||||| |||||||||| ||||| ||| |||||||||||||||| ||| |||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 34446677 - 34446554
Alignment:
Q  73 acactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacac-----ctatgattacactgaatcatgccattttctcaaat 167  Q
    ||||||||||||||| ||||||||||| ||| || ||||||  || || ||||| |||||     ||||||||||||||||| ||| |||||||||||||    
T  34446677 acactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgtcattttctcaaat 34446578  T
Q  168 tatcatcagtgtcggcgtgtctgt 191  Q
    ||| ||| ||||| | ||||||||    
T  34446577 tattatccgtgtcagagtgtctgt 34446554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 9024176 - 9024243
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||||||||| |||||||||| ||||| ||| |||||||||||||||||||  |||||| ||||||    
T  9024176 cgacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtc 9024243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 6389795 - 6389736
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgt 187  Q
    |||||||||||||||||| ||| ||  |||||||||||||||| ||| ||||||||||||    
T  6389795 gacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgt 6389736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 19602191 - 19602248
Alignment:
Q  131 acctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||||||||||| ||  |||||||||||||||| |||||||| || |||||    
T  19602191 acctatgattacactgaattatatcattttctcaaattattatcagtgttggtgtgtc 19602248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 12235526 - 12235578
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtc 180  Q
    |||||||||||||||||||||| ||| ||||||||| |||||| ||| |||||    
T  12235526 gacacctatgattacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 17168470 - 17168530
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||| |||||||| ||| ||  |||||||||||||||| |||||||| ||||||||    
T  17168470 gacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtc 17168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 12086352 - 12086411
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgt 187  Q
    |||||||||||||| ||||||| ||| |||| ||||||||||| ||| |||||| |||||    
T  12086352 gacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgtgt 12086411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 19040411 - 19040344
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||| ||||| ||| |||||||||||| |||  ||||||||||||||| | | |||||||||||||    
T  19040411 cgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 13364707 - 13364772
Alignment:
Q  123 acactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||| ||||| |||||||||||||||| ||   ||||||||||||||| | |||||||||| ||||    
T  13364707 acaccgacacatatgattacactgaattatatgattttctcaaattataagcagtgtcggcatgtc 13364772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 26562741 - 26562681
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| ||| |||||||||||| |||  ||||||||||||| | | |||||||||||||||    
T  26562741 gacacatataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtc 26562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 34895035 - 34895083
Alignment:
Q  122 gacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    ||||||||||||||||||||||||||||  |   |||||||||||||||    
T  34895035 gacactgacacctatgattacactgaattgtataattttctcaaattat 34895083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 20743286 - 20743345
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||    
T  20743286 acacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtc 20743345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 31243554 - 31243608
Alignment:
Q  127 tgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcg 181  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| || |||||||    
T  31243554 tgacacctatgattacactgaattatgtcattttctcaaattattataagtgtcg 31243608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 7012115 - 7012058
Alignment:
Q  131 acctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtc 7012058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 24343559 - 24343499
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||| |||||||||||| |||  ||||||||||||||| ||| |||||||||||||    
T  24343559 gacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtc 24343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 5654599 - 5654661
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtctgt 191  Q
    |||| |||||||||| ||||| ||| |||||||||||||||| |||||||||| | |||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgt 5654661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 18513243 - 18513300
Alignment:
Q  123 acactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtc 180  Q
    |||||||||| |||||||||| ||||| ||| |||||||||||||||| ||| |||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 944625 - 944674
Alignment:
Q  83 gattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacac 132  Q
    ||||| ||||||||| | ||||||||||||| ||| ||||||||||||||    
T  944625 gattaggtgtgtcccggtgtcggacacgcgtctgtgttcgacactgacac 944674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 7727961 - 7728018
Alignment:
Q  123 acactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtc 180  Q
    |||| ||||||||| |||| ||||||||||| ||||||||||| |||| ||| |||||    
T  7727961 acaccgacacctataattatactgaatcatgtcattttctcaacttattatcggtgtc 7728018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 10546194 - 10546137
Alignment:
Q  134 tatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtctgt 191  Q
    |||||||||| ||||| ||| |||||||||||||||| |||| ||||| | |||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatcattgtcgacatgtctgt 10546137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 32910602 - 32910549
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcgg 182  Q
    ||||| || |||||||||||| ||| |||||||||||||||| ||| |||||||    
T  32910602 acacccataattacactgaattatgtcattttctcaaattattatccgtgtcgg 32910549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 34515880 - 34515941
Alignment:
Q  127 tgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||| ||||||||||| ||| ||||||||  |||||| ||| |||||| ||||||    
T  34515880 tgacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtc 34515941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 16402218 - 16402278
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||| |||| ||||||||| ||||||  ||||||||||||||| ||| |||||||| ||||    
T  16402218 gacagctataattacactgtatcatgttattttctcaaattattatccgtgtcggcatgtc 16402278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 19562568 - 19562688
Alignment:
Q  73 acactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacc------tatgattacactgaatcatgccattttctcaaa 166  Q
    |||||||| |||||| ||||||||| | |||||||||| ||| |||| |||||||||||||      ||| |||||||||||  |||  |||||||||||    
T  19562568 acactcctcggattaggtgtgtccctgtgtcggacacgtgtt-gtatccgacactgacacctacacatataattacactgaactatgagattttctcaaa 19562666  T
Q  167 ttatcatcagtgtcggcgtgtc 188  Q
    |||| | |||||||||||||||    
T  19562667 ttattagcagtgtcggcgtgtc 19562688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 36878519 - 36878453
Alignment:
Q  122 gacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| ||||||||| |||||||||||| |||  ||||||||||||||| | | |||||||||||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 36878453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 17831538 - 17831598
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| |||||||||||||||| |||  ||||||||||||||| | | |||||||||||||    
T  17831538 gacacatatgattacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtc 17831598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 25361945 - 25361881
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgt 185  Q
    |||||||||||| ||| |||||||||||| |||  |||||||||||||||||   ||||||||||    
T  25361945 cgacactgacacatataattacactgaattatgtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 22794015 - 22794145
Alignment:
Q  57 aagctatgaagtataaacactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgcca 156  Q
    ||||||||||| |   |||||||| | |||| ||||||||| |||||||||| ||||  || |  ||||| ||||||||| ||||||||| || ||| ||    
T  22794015 aagctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacac-gacacctataattacactgtattatgtca 22794113  T
Q  157 ttttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||| ||||||||| ||| |||| | ||||||    
T  22794114 ttttttcaaattattatccgtgttgacgtgtc 22794145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 40747779 - 40747834
Alignment:
Q  127 tgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcgg 182  Q
    |||||||||| |||||| ||||| ||| |||||||||||||||| ||| |||||||    
T  40747779 tgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcgg 40747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 42004955 - 42005006
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtc 180  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| ||| |||||    
T  42004955 acacctatgattacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 6574040 - 6573987
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcgg 182  Q
    ||||||||||||||||| ||| ||  |||| ||||||||||||||| |||||||    
T  6574040 acacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcgg 6573987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 7918211 - 7918260
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||| ||| |||||||||||| |||  |||||||||||||||    
T  7918211 cgacactgacacatataattacactgaattatgtgattttctcaaattat 7918260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 398772 - 398832
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||| |||||||||||| |||  ||||| ||||||||| | | |||||||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtc 398832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 3921725 - 3921677
Alignment:
Q  122 gacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||  ||||||||| ||||| ||| ||||||||||||||||    
T  3921725 gacactgacacgcatgattacattgaattatgtcattttctcaaattat 3921677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 10535766 - 10535823
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgt 185  Q
    ||||| |||||||||||||||| ||| |||||||||||||||| ||| ||||||||||    
T  10535766 gacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 24011088 - 24011031
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgt 185  Q
    |||||||||||||||||| ||| ||| |||||||||||||||| |||| |||||||||    
T  24011088 gacacctatgattacactaaattatgtcattttctcaaattattatcaatgtcggcgt 24011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 18571033 - 18570973
Alignment:
Q  119 ttcgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgt 179  Q
    |||||||||||||| |||||||||| ||||| ||| |||||||||||||||| ||| ||||    
T  18571033 ttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 12748735 - 12748676
Alignment:
Q  129 acacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||||||||||||  ||| |||||||||||||||| |||  |||| |||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattatccatgtcagcgtgtc 12748676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 34006993 - 34007040
Alignment:
Q  123 acactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||| |||||||||||||||||||||| ||| || |||||||||||||    
T  34006993 acaccgacacctatgattacactgaattatgtcaatttctcaaattat 34007040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 11308011 - 11308053
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||||||||||||| ||| |||||| |||||||||    
T  11308011 gacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 19574028 - 19573970
Alignment:
Q  130 cacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||| |||||||||||| |||  ||||||| ||||||| ||| |||||||||||||    
T  19574028 cacctataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 21782835 - 21782885
Alignment:
Q  138 attacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||||||||| |||  ||||||||||||||| | |||||||||||||||    
T  21782835 attacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 21782885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 25544533 - 25544491
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||||||||||||| ||  ||||||||||||||||    
T  25544533 gacacctatgattacactgaattatatcattttctcaaattat 25544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 37411198 - 37411311
Alignment:
Q  74 cactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatcat 173  Q
    ||||||| ||| || | ||||||||| |||||||||||||  || |||||||  ||||| ||| || ||||||||| |||  ||||||||||||||| |     
T  37411198 cactcctcggactaggcgtgtcccagtgtcggacacgcgtc-gtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaattattag 37411296  T
Q  174 cagtgtcggcgtgtc 188  Q
    | |||||||| ||||    
T  37411297 cggtgtcggcatgtc 37411311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 44860379 - 44860330
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||| ||||| ||| |||||||||||| |||| |||||||||||||||    
T  44860379 cgacaccgacacatataattacactgaattatgcgattttctcaaattat 44860330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 23354659 - 23354711
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtc 180  Q
    |||||||||||||||||| ||| ||  |||||||||||||||| ||| |||||    
T  23354659 gacacctatgattacactaaattatatcattttctcaaattattatctgtgtc 23354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 32630675 - 32630802
Alignment:
Q  60 ctatgaagtataaacactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattt 159  Q
    |||||||| ||| |||||||| | |||| ||||||| ||  |||||||||| ||  |||| |||||||||||| ||| |||||| ||||| ||   ||||    
T  32630675 ctatgaagcatagacactcctcgaattaggtgtgtctcaatgtcggacacgtgtc-gtatccgacactgacacatataattacattgaattatataattt 32630773  T
Q  160 tctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||| ||| ||||| |||||||    
T  32630774 tctcaaattattatcggtgtcagcgtgtc 32630802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 26205714 - 26205805
Alignment:
Q  80 ttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacact-----gacacctatgattacactgaatcatgccattttctcaaa 166  Q
    |||||||||||||||||| | |||||| ||||||| || | ||||||      |||||||||||||||||||||| ||| ||||||||||||    
T  26205714 ttggattacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 28588674 - 28588741
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||| ||||||||| |||||||||||| |||  ||||||||||||||| | | |||||||||||||    
T  28588674 cgacaccgacacctataattacactgaattatgtgattttctcaaattattaccggtgtcggcgtgtc 28588741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 42469270 - 42469213
Alignment:
Q  131 acctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||||||||| ||  ||| |||||||||||||||| ||| |||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtc 42469213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 21191009 - 21191123
Alignment:
Q  73 acactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatca 172  Q
    |||||||| |||||| | ||||||| |||||||||||| | |||| | |||||| ||||| | | |||||||||||| |||  ||||| ||||||||| |    
T  21191009 acactcctcggattaggcgtgtcccggagtcggacacgtg-ttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattatta 21191107  T
Q  173 tcagtgtcggcgtgtc 188  Q
     | |||||||| ||||    
T  21191108 gctgtgtcggcatgtc 21191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 31264490 - 31264448
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  31264490 gacacttatgattacactgaattatgtcattttctcaaattat 31264448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 2039863 - 2039916
Alignment:
Q  135 atgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||||| ||||||||| |||||||||||||||| | | |||||| ||||||    
T  2039863 atgattacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtc 2039916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 2577193 - 2577241
Alignment:
Q  134 tatgattacactgaatcatgccattttctcaaattatcatcagtgtcgg 182  Q
    |||||||||||| ||| ||| |||||||||||||||| ||| |||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcgg 2577241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 4344787 - 4344735
Alignment:
Q  135 atgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgt 187  Q
    ||||||||||||||| ||| |||||| ||||||||| ||| ||||| ||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattattatcggtgtcagcgtgt 4344735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 21194205 - 21194253
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaatta 169  Q
    ||||||| ||||| ||||||||||||||| |||  ||||||||||||||    
T  21194205 cgacactaacaccaatgattacactgaattatgtgattttctcaaatta 21194253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 30067981 - 30068087
Alignment:
Q  73 acactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatca 172  Q
    |||||| | |||||| ||||||||||| ||||||||| |||  |||| |||| | | |||||| ||||| ||||||| ||| |||||||||||||||| |    
T  30067981 acactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcgg-cacctacgattatactgaattatgtcattttctcaaattatta 30068079  T
Q  173 tcagtgtc 180  Q
    || |||||    
T  30068080 tccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 3025610 - 3025561
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||||||| |||||||||||| |||  |||||||||||||||    
T  3025610 cgacactgacacctataattacactgaattatgtgattttctcaaattat 3025561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 44067568 - 44067508
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| ||| ||||||||| || ||| |||||||||||||||| ||| |||||||||||||    
T  44067568 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtc 44067508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 13844596 - 13844663
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    |||||| ||||| ||| |||||||| ||| |||  ||||||||||||||| | |||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 28819243 - 28819181
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtctg 190  Q
    ||||| ||||||| || ||| | |||||||||||||||||||| |||||| ||||| ||||||    
T  28819243 gacacatatgattgcattgagttatgccattttctcaaattattatcagtttcggcttgtctg 28819181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 28883885 - 28883927
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  28883885 gacacctatgattccactgaattatgtcattttctcaaattat 28883927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 39820507 - 39820439
Alignment:
Q  101 gtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||||  || | |||||| |||||||||||||||||| ||| ||  ||||||||||||||||    
T  39820507 gtcggacacgcgtcggtgtccgacac-gacacctatgattacactaaattatatcattttctcaaattat 39820439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 7616863 - 7616919
Alignment:
Q  135 atgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtctgt 191  Q
    ||||||||| |||||  || |||||||||||||||||||||| || | |||||||||    
T  7616863 atgattacattgaattgtgtcattttctcaaattatcatcagcgttgacgtgtctgt 7616919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 11927086 - 11927150
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgt 185  Q
    |||||| ||||| ||| |||||||||||| |||  ||||| ||||||||| | ||||||||||||    
T  11927086 cgacaccgacacatataattacactgaattatgtgattttatcaaattattaacagtgtcggcgt 11927150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 18646218 - 18646182
Alignment:
Q  134 tatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||||||||||| |||||| |||||||||    
T  18646218 tatgattacactgaatcatgtcattttttcaaattat 18646182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 31236584 - 31236644
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| ||| |||||| ||||| |||  ||||||||||||||| | |||||||||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 31236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 56981 - 56932
Alignment:
Q  121 cgacactgacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    |||||||||||| |||||||||||||||| ||  ||||||||||||||||    
T  56981 cgacactgacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 415 - 526
Alignment:
Q  73 acactccttggattacgtgtgtcccagagtcggacacgcgtttgtattcgacactgacacctatgattacactgaatcatgccattttctcaaattatca 172  Q
    |||||||| |||||| ||||||||| | |||||||||||| | || | |||||| ||||| | | ||||||||||||  ||  ||||| ||||||||| |    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacgcg-tcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaaattatta 513  T
Q  173 tcagtgtcggcgt 185  Q
     ||||||||||||    
T  514 gcagtgtcggcgt 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 26050 - 26008
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattat 170  Q
    ||||||||||||| |||||||||||| |||||||||| |||||    
T  26050 gacacctatgattgcactgaatcatgtcattttctcacattat 26008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 8063 - 8120
Alignment:
Q  131 acctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||||| ||||||||||| ||| |||||||||||||||| ||| || ||| ||||||    
T  8063 acctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtc 8120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 225275 - 225335
Alignment:
Q  128 gacacctatgattacactgaatcatgccattttctcaaattatcatcagtgtcggcgtgtc 188  Q
    ||||| ||| |||||| || || ||| |||||||||||||||| ||| |||||||||||||    
T  225275 gacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtc 225335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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