View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_high_3 (Length: 376)

Name: NF14394_high_3
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_high_3
NF14394_high_3
[»] chr3 (6 HSPs)
chr3 (18-368)||(54861521-54861871)
chr3 (66-205)||(25568541-25568682)
chr3 (20-119)||(51917878-51917977)
chr3 (89-158)||(35018507-35018577)
chr3 (255-297)||(51917802-51917844)
chr3 (89-154)||(30326938-30327003)
[»] chr1 (18 HSPs)
chr1 (22-297)||(19810837-19811115)
chr1 (66-213)||(41590452-41590599)
chr1 (66-141)||(19809943-19810018)
chr1 (89-171)||(40571594-40571675)
chr1 (91-140)||(10239500-10239549)
chr1 (89-149)||(347110-347170)
chr1 (89-141)||(17557708-17557760)
chr1 (29-141)||(19810683-19810795)
chr1 (102-157)||(40566046-40566102)
chr1 (102-141)||(21641405-21641444)
chr1 (124-158)||(40188675-40188709)
chr1 (111-152)||(1306057-1306098)
chr1 (89-142)||(7525054-7525107)
chr1 (129-158)||(9632291-9632320)
chr1 (103-152)||(11584349-11584398)
chr1 (22-99)||(34626801-34626878)
chr1 (255-299)||(19811149-19811193)
chr1 (130-158)||(27829719-27829747)
[»] chr6 (2 HSPs)
chr6 (66-299)||(1206002-1206239)
chr6 (89-158)||(19385574-19385642)
[»] chr7 (10 HSPs)
chr7 (18-168)||(39079899-39080049)
chr7 (18-141)||(16015394-16015517)
chr7 (18-141)||(14595866-14595989)
chr7 (18-157)||(21033799-21033939)
chr7 (25-167)||(16015680-16015821)
chr7 (66-167)||(14596152-14596252)
chr7 (19-78)||(46870311-46870370)
chr7 (89-158)||(24965957-24966026)
chr7 (89-145)||(21048690-21048746)
chr7 (89-133)||(27820913-27820957)
[»] chr8 (6 HSPs)
chr8 (18-158)||(30590444-30590584)
chr8 (229-299)||(30590343-30590414)
chr8 (89-167)||(29053703-29053781)
chr8 (135-209)||(25971171-25971247)
chr8 (89-146)||(30014320-30014376)
chr8 (89-141)||(5692901-5692953)
[»] chr5 (6 HSPs)
chr5 (20-295)||(31973267-31973540)
chr5 (89-158)||(15844493-15844562)
chr5 (18-127)||(4796354-4796463)
chr5 (18-140)||(16275237-16275359)
chr5 (112-170)||(40261034-40261092)
chr5 (102-141)||(22198986-22199025)
[»] chr4 (11 HSPs)
chr4 (93-158)||(17912812-17912877)
chr4 (101-158)||(24001541-24001598)
chr4 (90-158)||(39778352-39778422)
chr4 (18-127)||(48046353-48046462)
chr4 (89-149)||(46676685-46676745)
chr4 (112-159)||(22572446-22572493)
chr4 (89-171)||(54595329-54595414)
chr4 (104-158)||(49190161-49190215)
chr4 (110-171)||(3137435-3137496)
chr4 (18-127)||(23311469-23311578)
chr4 (111-147)||(50816705-50816741)
[»] chr2 (8 HSPs)
chr2 (89-135)||(3008426-3008472)
chr2 (91-151)||(7252240-7252300)
chr2 (102-158)||(43275510-43275566)
chr2 (127-158)||(3185961-3185992)
chr2 (250-297)||(9889466-9889513)
chr2 (255-298)||(20135120-20135163)
chr2 (257-299)||(21373907-21373949)
chr2 (101-158)||(21216459-21216516)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 54861521 - 54861871
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54861521 aggggtggatttagtctcactttgcctggacatatggcatatgcagtgtttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 54861620  T
Q  118 ttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgtggctttccgtatcgtctacacttcaggcttattgggaccgagtgtg 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54861621 ttacgcccaacccaaattttaagatggtatgagagcctatcttatatctgttgtggctttccgtatcgtctacacttcaggcttattgggaccgagtgtg 54861720  T
Q  218 aggggttgtggtggaaattctgccaccattgtgaccacccctagctgcctaattaaggcatttgtgttgccttcattgcagctccgcatccctcaagccg 317  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54861721 aggggttgtggtggaaattctgccatcattgtgaccacccctagctgcctaattaaggcatttgtgttgccttcattgcagctccggatccctcaagccg 54861820  T
Q  318 attttgtatgatggagttaatctaccctttgtattttgaataagaataatc 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54861821 attttgtatgatggagttaatctaccctttgtattttgaataagaataatc 54861871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 25568541 - 25568682
Alignment:
Q  66 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 165  Q
    |||||||| |||||| |||  | ||||||| |||  |||| |||||||||||||| |||||| ||||||| |  |||||||| ||||||||||||| ||     
T  25568541 tttataaaccttgggcagctttcaccttactagccggtttcgttaggttgagttaggcccaaaccaaattctgtgatggtattagagcctatcttagatt 25568640  T
Q  166 tgttgt--ggctttccgtatcgtctacacttcaggcttattg 205  Q
    ||||||  ||||| |||  ||||||||  |||||||| ||||    
T  25568641 tgttgttgggcttcccgcgtcgtctacggttcaggctaattg 25568682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 51917878 - 51917977
Alignment:
Q  20 gggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagtt 119  Q
    ||||||||||||||  || |||||| || |||||||||||| ||| |||||||||||||||  ||  | | ||||||||| |||||||| ||| ||||||    
T  51917878 gggtggatttagtcctacattgcctagagatatggcatatgtagtgtttataaagcttgggccgccctcagcttacaagccagttttgtaaggatgagtt 51917977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 35018507 - 35018577
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacc-caaattttaagatggtatcagagcctatc 158  Q
    |||||||||||| | ||||| |||| |||||| |||||||| |||||| ||||||| ||||||||||||||    
T  35018507 accttacaagctgggtttgtaaggtcgagttaggcccaaccacaaattctaagatgatatcagagcctatc 35018577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 51917802 - 51917844
Alignment:
Q  255 cccctagctgcctaattaaggcatttgtgttgccttcattgca 297  Q
    ||||||||||||||||| | ||||||| |||||||||||||||    
T  51917802 cccctagctgcctaattgaagcatttgggttgccttcattgca 51917844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 30326938 - 30327003
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcc 154  Q
    |||||||||||  ||||||| || || ||||| |||||||||| ||| ||||||||||| ||||||    
T  30326938 accttacaagccggttttgtgagtttaagttaggcccaacccagattctaagatggtattagagcc 30327003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 19811115 - 19810837
Alignment:
Q  22 gtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttac 121  Q
    |||||||||||| ||| |||||| || ||||||| | |  ||| ||| || |||||||| | |  || ||||||||||  ||||||| ||||||| |||     
T  19811115 gtggatttagtcccacgttgcctagagatatggcctgtttagtgtttttatagcttgggcaacccttgccttacaagccggttttgtaaggttgacttag 19811016  T
Q  122 gcccaacccaaattttaagatggtatcagagcctatcttatatctgttg--tggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgag 219  Q
    ||| ||||||||||||||||||||||||||| ||||| || ||||||||   ||||| ||| |||||| || ||||||||| |||||| | |||  ||||    
T  19811015 gccgaacccaaattttaagatggtatcagagactatcctagatctgttgcagggcttcccgcatcgtccacgcttcaggctcattgggcctgagcctgag 19810916  T
Q  220 gggttgtggtggaaattctgccaccattgt-gaccacccctagctgcctaattaaggcatttgtgttgccttcattgca 297  Q
    ||| | ||||||||||||||||   ||||| | ||||||||||||||||||||  |||||||| |||| ||||||||||    
T  19810915 ggggtatggtggaaattctgccttaattgtggtccacccctagctgcctaattgcggcatttgggttggcttcattgca 19810837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 41590599 - 41590452
Alignment:
Q  66 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 165  Q
    ||||||||||||||| | |  | | |||||||||  |||| || ||||||||||| ||| |||||||||| |||||||||||||||||||||| || ||     
T  41590599 tttataaagcttgggcaaccctcatcttacaagccggtttcgtaaggttgagttaggcc-aacccaaattctaagatggtatcagagcctatcctagata 41590501  T
Q  166 tgttgt-ggctttccgtatcgtctacacttcaggcttattgggaccgag 213  Q
    |||| | ||||| | |||||||| | |||||||||| |||||| |||||    
T  41590500 tgttatgggcttactgtatcgtccatacttcaggctaattgggcccgag 41590452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 19810018 - 19809943
Alignment:
Q  66 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 141  Q
    ||||||||||||||| |||  | |||||||||||   |||||| ||||||||||| |||||||||||| |||||||    
T  19810018 tttataaagcttgggcagccttcaccttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaaga 19809943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 40571594 - 40571675
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 171  Q
    |||||||||| | ||||||| ||||||||||| |||||| ||||| ||||||||||||||| || ||||| |  |||||||||    
T  40571594 accttacaagttggttttgtaaggttgagttaggcccaatccaaa-tttaagatggtatcaaagtctatccttgatctgttgt 40571675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 10239500 - 10239549
Alignment:
Q  91 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaag 140  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  10239500 cttacaagccagttttgtaaggttgagttaggcccaacccaagttttaag 10239549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 347110 - 347170
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatca 149  Q
    |||||||||||| ||||||| ||||||||||| | |||||||||||| ||| ||| |||||    
T  347110 accttacaagctggttttgtaaggttgagttagggccaacccaaattctaatatgttatca 347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 17557760 - 17557708
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 141  Q
    ||||||||||||  |||||| ||||||||||| |||||||||||||| |||||    
T  17557760 accttacaagctgattttgtaaggttgagttaggcccaacccaaattctaaga 17557708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 19810795 - 19810683
Alignment:
Q  29 tagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaac 128  Q
    ||||| ||| |||||| || ||||||| | |||| | ||||||||||||||| | |  | |||||| ||||   |||||| |||||||| || |||||||    
T  19810795 tagtcccacattgcctagagatatggcctgtgcaatgtttataaagcttgggcaaccttcaccttagaagccgattttgtaaggttgagctaggcccaac 19810696  T
Q  129 ccaaattttaaga 141  Q
    |||||||||||||    
T  19810695 ccaaattttaaga 19810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 40566102 - 40566046
Alignment:
Q  102 gttttgttaggttgagttacgcccaacccaaattt-taagatggtatcagagcctat 157  Q
    ||||||| |||||| |||| |||||||||||| || |||||||||||||||||||||    
T  40566102 gttttgtaaggttgggttatgcccaacccaaaattctaagatggtatcagagcctat 40566046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 21641444 - 21641405
Alignment:
Q  102 gttttgttaggttgagttacgcccaacccaaattttaaga 141  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  21641444 gttttgtaaggttgagttaggcccaacccaaattttaaga 21641405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 40188709 - 40188675
Alignment:
Q  124 ccaacccaaattttaagatggtatcagagcctatc 158  Q
    |||||||||||||||||||||| ||||||||||||    
T  40188709 ccaacccaaattttaagatggtgtcagagcctatc 40188675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 1306057 - 1306098
Alignment:
Q  111 ggttgagttacgcccaacccaaattttaagatggtatcagag 152  Q
    |||||||||  |||||||| ||||||||||||||||||||||    
T  1306057 ggttgagtttggcccaaccaaaattttaagatggtatcagag 1306098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 7525054 - 7525107
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagat 142  Q
    |||||||||||| ||||||| ||||||||||| || ||| ||||||| ||||||    
T  7525054 accttacaagctggttttgtaaggttgagttaggctcaatccaaattctaagat 7525107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 9632291 - 9632320
Alignment:
Q  129 ccaaattttaagatggtatcagagcctatc 158  Q
    ||||||||||||||||||||||||||||||    
T  9632291 ccaaattttaagatggtatcagagcctatc 9632320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 11584349 - 11584398
Alignment:
Q  103 ttttgttaggttgagttacgcccaacccaaattttaagatggtatcagag 152  Q
    |||||||||| ||||||| | |||||||||||| ||| ||||||||||||    
T  11584349 ttttgttaggctgagttaggtccaacccaaattctaatatggtatcagag 11584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 34626878 - 34626801
Alignment:
Q  22 gtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagc 99  Q
    |||||||||||||||| || ||  || ||||||||| || ||| ||||||||||||||| |||  | |||||||||||    
T  34626878 gtggatttagtctcacatttcccagagatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaagc 34626801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 19811193 - 19811149
Alignment:
Q  255 cccctagctgcctaattaaggcatttgtgttgccttcattgcagc 299  Q
    |||||||| ||||||||  |||||||| |||||||||||||||||    
T  19811193 cccctagccgcctaattgtggcatttgggttgccttcattgcagc 19811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 27829719 - 27829747
Alignment:
Q  130 caaattttaagatggtatcagagcctatc 158  Q
    |||||||||||||||||||||||||||||    
T  27829719 caaattttaagatggtatcagagcctatc 27829747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 1206239 - 1206002
Alignment:
Q  66 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 165  Q
    |||||||||||| || |||  | |||||||||||| | ||||| ||| | ||||| | |||||||||||| ||||||||||||||| |||||| |||| |    
T  1206239 tttataaagcttaggcagccctcaccttacaagctggatttgtaaggctaagttaggtccaacccaaattctaagatggtatcagaacctatcctatacc 1206140  T
Q  166 tgttgt--ggctttccgtatcgtctacacttcaggcttatt-gggaccgagtgtgaggggttgtggtggaaattctgccaccattg-tgaccacccctag 261  Q
    ||||||  ||||||| | ||||||||| ||||| | | ||| ||| | |||  ||||||  |||| |||||||||||||  |||||  | || |||||||    
T  1206139 tgttgttaggctttctgcatcgtctacgcttcaagttcattcgggcctgagcatgagggtgtgtgttggaaattctgccttcattgcggtccgcccctag 1206040  T
Q  262 ctgcctaattaaggcatttgtgttgccttcattgcagc 299  Q
    | ||||||||  |||||||| |||||||||||||||||    
T  1206039 ccgcctaattgcggcatttgggttgccttcattgcagc 1206002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 19385574 - 19385642
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    ||||| |||||| |||||||  |||||||||| || || |||||||| ||||||||||||| ||||||||    
T  19385574 acctttcaagctggttttgtatggttgagttaggctca-cccaaattctaagatggtatcaaagcctatc 19385642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 39080049 - 39079899
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    ||||||||||||| |||||| |||||| || ||||| ||| || ||| |||||||| |||| | |||    || ||||||||  ||||||| ||||| ||    
T  39080049 aggggtggatttaatctcacattgcctagagatatgacatgtgtagtgtttataaaacttgtgcagcccccactttacaagccggttttgtaaggtttag 39079950  T
Q  118 ttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgt 168  Q
    ||| ||||||||||||||||||||||| ||||||||||||| || ||||||    
T  39079949 ttaggcccaacccaaattttaagatggcatcagagcctatcctagatctgt 39079899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 16015517 - 16015394
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    |||||||||||||||| ||| |||||| || ||||||||| || ||| ||||||||| ||||| |||  | |||||| ||||| ||||||| ||||||||    
T  16015517 aggggtggatttagtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaagctggttttgtaaggttgag 16015418  T
Q  118 ttacgcccaacccaaattttaaga 141  Q
    ||| | |||| |||||||||||||    
T  16015417 ttaggtccaatccaaattttaaga 16015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 14595989 - 14595866
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    |||||||||||||| | ||| |||||| || ||||||||| || ||| ||||||||| ||||| |||  | |||||| ||||  ||||||| ||||||||    
T  14595989 aggggtggatttagccccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaagccggttttgtaaggttgag 14595890  T
Q  118 ttacgcccaacccaaattttaaga 141  Q
    ||| | |||| |||||||||||||    
T  14595889 ttaggtccaatccaaattttaaga 14595866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 21033939 - 21033799
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttat-aaagcttgggtagcagttaccttacaagctagttttgttaggttga 116  Q
    ||||||| |||||||||||| |||||| || ||||||||| ||  || ||||| |||||||||| |||  | |||||| |||| | |||||| |||||||    
T  21033939 aggggtgaatttagtctcacattgcctagagatatggcatttgtggtgtttataaaagcttgggcagccctcaccttaaaagccaattttgtaaggttga 21033840  T
Q  117 gttacgcccaacccaaattttaagatggtatcagagcctat 157  Q
    |||| || ||||  ||||| |||| |||||| | |||||||    
T  21033839 gttaggctcaactgaaattctaagttggtattaaagcctat 21033799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 16015821 - 16015680
Alignment:
Q  25 gatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcc 124  Q
    |||||| || ||| |||||| || ||||||| |  | ||| |||| |||||||||| |||  | |||||||||| | | ||||| ||||||||||| |||    
T  16015821 gatttattcccacattgcctagagatatggctttcgtagtgtttagaaagcttgggcagccctcaccttacaag-tcggtttgtaaggttgagttaggcc 16015723  T
Q  125 caacccaaattttaagatggtatcagagcctatcttatatctg 167  Q
    ||| | ||||||||||||| ||| |||||||||| || |||||    
T  16015722 caatcaaaattttaagatgatattagagcctatcctagatctg 16015680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 14596252 - 14596152
Alignment:
Q  66 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 165  Q
    |||| |||||||||| |||  | |||||||||||  |||| || ||||||||||| |||||| | ||||||||||||| ||| |||||||||| || |||    
T  14596252 tttagaaagcttgggcagccctcaccttacaagccggttt-gtaaggttgagttaggcccaatcaaaattttaagatgatattagagcctatcctagatc 14596154  T
Q  166 tg 167  Q
    ||    
T  14596153 tg 14596152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 46870311 - 46870370
Alignment:
Q  19 ggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttg 78  Q
    ||||||||||||||| ||| |||||| |  ||||||||| || |||||||||||||||||    
T  46870311 ggggtggatttagtcccacattgcctagggatatggcatgtgtagtatttataaagcttg 46870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 24966026 - 24965957
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    |||||||| | | |||||||  |||||||||  | |||||||||||||| |||| |||||||||||||||    
T  24966026 accttacacgttggttttgtagggttgagttgggtccaacccaaattttgagatagtatcagagcctatc 24965957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 21048746 - 21048690
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggt 145  Q
    ||||||||||| | |||| | ||||||||||| || ||||||||||| |||||||||    
T  21048746 accttacaagccaattttataaggttgagttaggctcaacccaaattctaagatggt 21048690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 27820913 - 27820957
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaa 133  Q
    ||||||||||| |||||||| ||||||||||| ||| ||||||||    
T  27820913 accttacaagccagttttgtaaggttgagttaggccgaacccaaa 27820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 30590444 - 30590584
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    |||||||||||||||| ||| |||| | || ||||||||| || ||| ||||||||||||||| |||  | |||||||||||  ||||||| |||||||     
T  30590444 aggggtggatttagtcccacattgcatagatatatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaagccggttttgtaaggttgac 30590543  T
Q  118 ttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    ||| ||| | |||||||| ||| ||||||||| ||||||||    
T  30590544 ttaggcctagcccaaattctaatatggtatcaaagcctatc 30590584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 30590343 - 30590414
Alignment:
Q  229 tggaaattctgccaccattgtgac-cacccctagctgcctaattaaggcatttgtgttgccttcattgcagc 299  Q
    ||||||||||||| ||||||||   ||||||||||||||||| |   ||||||| |||||||||||||||||    
T  30590343 tggaaattctgcctccattgtggttcacccctagctgcctaactgtagcatttgggttgccttcattgcagc 30590414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 29053781 - 29053703
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctg 167  Q
    |||||||||| ||||||||| |||||||||||    ||||| ||||| ||||||||||| ||||| |||| || |||||    
T  29053781 accttacaagttagttttgtaaggttgagttaaattcaaccgaaattctaagatggtattagagcttatcctagatctg 29053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 25971171 - 25971247
Alignment:
Q  135 tttaagatggtatcagagcctatcttatatctgttgt--ggctttccgtatcgtctacacttcaggcttattgggac 209  Q
    |||||||||| ||||||||||||| || |||||||||  | ||| ||| |||||| |||||||||||| | ||||||    
T  25971171 tttaagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtccacacttcaggctcactgggac 25971247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 30014376 - 30014320
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggta 146  Q
    ||||||||| || |||| || ||||||||||| || ||||||||||||||||||||||    
T  30014376 accttacaacctggtttcgtaaggttgagtta-gctcaacccaaattttaagatggta 30014320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 5692953 - 5692901
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 141  Q
    |||||||||| |||||||||  |||||||||| ||  ||||||||||||||||    
T  5692953 accttacaagttagttttgtagggttgagttaagcttaacccaaattttaaga 5692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 31973540 - 31973267
Alignment:
Q  20 gggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagtt 119  Q
    |||||||||||||| ||| ||| || || ||||||| |||| ||| ||||||||| ||||| |||  | |||| ||| ||| ||||||| |||||    |    
T  31973540 gggtggatttagtcccacattgtctagagatatggcctatgtagtgtttataaagtttgggcagccctcacctcacacgctggttttgtaaggtt----t 31973445  T
Q  120 acgcccaacccaaattttaagatggtatcagagcctatcttatatctgttg-tggctttccgtatcgtctacacttcaggcttattgggaccgagtgtga 218  Q
    | |||||||||||||| |||||||||||||||| ||||  || || ||||| ||  |||||| |  ||| || |||| |||| |||||| ||||| ||||    
T  31973444 atgcccaacccaaattctaagatggtatcagagtctatactagatatgttgttgtgtttccgcactgtccacgcttctggctcattgggcccgagcgtga 31973345  T
Q  219 ggggttgtggtggaaattctgccaccattg-tgaccacccctagctgcctaattaaggcatttgtgttgccttcattg 295  Q
    |||  |||| |||||||||||||  |||||  | || |||| ||| ||||||||  |||||||| ||| |||||||||    
T  31973344 gggagtgtgttggaaattctgccttcattgcagtccgcccccagccgcctaattgcggcatttgggtttccttcattg 31973267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 15844562 - 15844493
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    ||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||||||    
T  15844562 accttactagccagttttgtaagattgagttaggcccaacccaaattttaagatggtgtcagagcctatc 15844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 4796354 - 4796463
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    |||||||||||||||| ||| |||| | || ||||||||| || ||| |||||||||| |||| |||  | |||||||||||  ||||||| ||| ||||    
T  4796354 aggggtggatttagtcacacattgcttagagatatggcatgtgtagtgtttataaagcatgggcagccctcaccttacaagcgggttttgtaaggatgag 4796453  T
Q  118 ttacgcccaa 127  Q
    ||| ||||||    
T  4796454 ttaggcccaa 4796463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 16275237 - 16275359
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    |||||||||||||||| ||| |||||| || ||||||| | || ||| | | ||||| ||||| |||  | |||||||||| | ||||||| ||||||||    
T  16275237 aggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtgtaaagtttgggcagccctcaccttacaaggtggttttgtaaggttgag 16275336  T
Q  118 ttacgcccaacccaaattttaag 140  Q
    |||  |||| |||||||| ||||    
T  16275337 ttagacccagcccaaattctaag 16275359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 40261092 - 40261034
Alignment:
Q  112 gttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttg 170  Q
    ||||| ||| |||||||||||||| ||| ||||||||||| ||||||| ||||||||||    
T  40261092 gttgaattaggcccaacccaaattctaatatggtatcagaacctatctaatatctgttg 40261034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 22199025 - 22198986
Alignment:
Q  102 gttttgttaggttgagttacgcccaacccaaattttaaga 141  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  22199025 gttttgtaaggttgagttaggcccaacccaaattttaaga 22198986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 17912812 - 17912877
Alignment:
Q  93 tacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    |||||||  |||||||  |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17912812 tacaagccggttttgtagggttgagttaggcccaacccaaattttaagatggtatgagagcctatc 17912877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 24001541 - 24001598
Alignment:
Q  101 agttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||| |||||    
T  24001541 agttttgtaaggttgagttaagcccaacccaaattctaagatagtatcagagtctatc 24001598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 39778422 - 39778352
Alignment:
Q  90 ccttacaagctagttttgttagg-ttgagttacgcccaacccaaa-ttttaagatggtatcagagcctatc 158  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||| ||||    
T  39778422 ccttacaagctggttttgtaagggttgagttaggcccaacccaaaattttaagctggtatcagagcatatc 39778352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 48046353 - 48046462
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    |||||||||||||||| ||| |||||| || ||||||||| || ||| |||| |||| |||||  ||  | |||||||||||  ||||||| | ||||||    
T  48046353 aggggtggatttagtcccacattgcctagagatatggcatgtgtagtgtttacaaagtttgggccgccctcaccttacaagccggttttgtaacgttgag 48046452  T
Q  118 ttacgcccaa 127  Q
    ||| ||||||    
T  48046453 ttaggcccaa 48046462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 46676685 - 46676745
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatca 149  Q
    |||||||||| | |||||||  |||||||||| | |||||||||||||||||||| |||||    
T  46676685 accttacaagatggttttgtagggttgagttaggtccaacccaaattttaagatgatatca 46676745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 22572446 - 22572493
Alignment:
Q  112 gttgagttacgcccaacccaaattttaagatggtatcagagcctatct 159  Q
    ||||||||| | |||||||||| ||||||||| |||||||||||||||    
T  22572446 gttgagttaggaccaacccaaaatttaagatgatatcagagcctatct 22572493  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 54595414 - 54595329
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaattt---taagatggtatcagagcctatcttatatctgttgt 171  Q
    ||||||||||| |||||||  ||||||||||| |||||||||||| ||    |||||||||| |||||||||| || || ||||||    
T  54595414 accttacaagcaagttttgcgaggttgagttaagcccaacccaaaattataaaagatggtattagagcctatcctagatttgttgt 54595329  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 49190215 - 49190161
Alignment:
Q  104 tttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    ||||| || |||||||  || ||||||||||| ||||||||||||||||||||||    
T  49190215 tttgtaagattgagtttggctcaacccaaattctaagatggtatcagagcctatc 49190161  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 3137496 - 3137435
Alignment:
Q  110 aggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 171  Q
    ||||||| ||| ||||||||||||||  ||||| |||| |||||||||| || |||||||||    
T  3137496 aggttgatttaggcccaacccaaattccaagatagtattagagcctatcctaaatctgttgt 3137435  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 23311578 - 23311469
Alignment:
Q  18 aggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgag 117  Q
    ||||||||||||||||  || |||  | || ||||||||| || ||| |||||||||| |||| |||  |||||||||||||  ||||||| ||| |||     
T  23311578 aggggtggatttagtcctacattgtttagagatatggcatgtgtagtgtttataaagcgtgggcagcctttaccttacaagccggttttgtaaggatgac 23311479  T
Q  118 ttacgcccaa 127  Q
    ||| ||||||    
T  23311478 ttaggcccaa 23311469  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 50816741 - 50816705
Alignment:
Q  111 ggttgagttacgcccaacccaaattttaagatggtat 147  Q
    |||||||||| |||||||||||||||| |||||||||    
T  50816741 ggttgagttaggcccaacccaaattttgagatggtat 50816705  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 3008426 - 3008472
Alignment:
Q  89 accttacaagctagttttgttaggttgagttacgcccaacccaaatt 135  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  3008426 accttacaagccagttttgtaaggttgagttaggcccaacccaaatt 3008472  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 7252240 - 7252300
Alignment:
Q  91 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcaga 151  Q
    |||||||| | |||||||  |||||||||| || ||||||||||| |||||||||||||||    
T  7252240 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 7252300  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 43275510 - 43275566
Alignment:
Q  102 gttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    ||||||| ||||| |||||  ||||||||||| ||||| ||||||||||||||||||    
T  43275510 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatc 43275566  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 158
Target Start/End: Original strand, 3185961 - 3185992
Alignment:
Q  127 acccaaattttaagatggtatcagagcctatc 158  Q
    ||||||||||||||||||||||||||||||||    
T  3185961 acccaaattttaagatggtatcagagcctatc 3185992  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 9889513 - 9889466
Alignment:
Q  250 gaccacccctagctgcctaattaaggcatttgtgttgccttcattgca 297  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||    
T  9889513 gaccacccctagcttcctaattgtggcatttgggttgccttcattgca 9889466  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 20135163 - 20135120
Alignment:
Q  255 cccctagctgcctaattaaggcatttgtgttgccttcattgcag 298  Q
    |||| ||||||||||||  |||||||||||||||||||||||||    
T  20135163 ccccaagctgcctaattgtggcatttgtgttgccttcattgcag 20135120  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 21373907 - 21373949
Alignment:
Q  257 cctagctgcctaattaaggcatttgtgttgccttcattgcagc 299  Q
    |||||||||||| ||  ||||||||||||||||||||||||||    
T  21373907 cctagctgcctacttgcggcatttgtgttgccttcattgcagc 21373949  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 21216516 - 21216459
Alignment:
Q  101 agttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 158  Q
    ||||||||  |||||||||| |||||| | |||||||||||||||||  |||||||||    
T  21216516 agttttgtggggttgagttaagcccaatcaaaattttaagatggtattggagcctatc 21216459  T

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