View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_high_5 (Length: 363)

Name: NF14394_high_5
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_high_5
NF14394_high_5
[»] chr2 (16 HSPs)
chr2 (11-268)||(39029364-39029627)
chr2 (289-346)||(39029624-39029681)
chr2 (303-346)||(41197410-41197453)
chr2 (303-344)||(36183508-36183549)
chr2 (303-346)||(451830-451873)
chr2 (303-346)||(3243835-3243878)
chr2 (303-346)||(3866129-3866172)
chr2 (303-346)||(7326342-7326385)
chr2 (307-346)||(12734760-12734799)
chr2 (303-346)||(23997671-23997714)
chr2 (303-346)||(24583814-24583857)
chr2 (303-346)||(25834738-25834781)
chr2 (307-346)||(38429945-38429984)
chr2 (303-346)||(45367807-45367850)
chr2 (304-346)||(11992290-11992332)
chr2 (305-346)||(41763224-41763265)
[»] chr8 (10 HSPs)
chr8 (304-346)||(12025847-12025889)
chr8 (303-346)||(42854186-42854229)
chr8 (303-346)||(11523905-11523948)
chr8 (303-346)||(12491320-12491363)
chr8 (303-346)||(21121203-21121246)
chr8 (303-346)||(36545206-36545249)
chr8 (303-346)||(40813381-40813424)
chr8 (303-342)||(6510614-6510653)
chr8 (303-346)||(18125230-18125273)
chr8 (303-346)||(36395131-36395174)
[»] chr1 (16 HSPs)
chr1 (303-347)||(696326-696370)
chr1 (303-346)||(8671975-8672018)
chr1 (303-346)||(1210802-1210845)
chr1 (303-346)||(4001637-4001680)
chr1 (303-346)||(8391829-8391872)
chr1 (303-346)||(9592791-9592834)
chr1 (303-346)||(15085991-15086034)
chr1 (303-346)||(30202312-30202355)
chr1 (303-346)||(34792531-34792574)
chr1 (305-346)||(32082927-32082968)
chr1 (305-346)||(49347575-49347616)
chr1 (303-346)||(4029179-4029222)
chr1 (303-346)||(51602113-51602156)
chr1 (303-345)||(25979414-25979456)
chr1 (302-346)||(27520385-27520429)
chr1 (303-343)||(51440950-51440990)
[»] chr7 (21 HSPs)
chr7 (303-346)||(2885904-2885947)
chr7 (303-346)||(29650441-29650484)
chr7 (303-346)||(43281731-43281774)
chr7 (303-346)||(45836662-45836705)
chr7 (303-346)||(12841457-12841500)
chr7 (303-346)||(15682231-15682274)
chr7 (303-346)||(31005280-31005323)
chr7 (303-346)||(33349988-33350031)
chr7 (303-346)||(36652049-36652092)
chr7 (303-346)||(37618002-37618045)
chr7 (303-346)||(38607061-38607104)
chr7 (304-346)||(24598369-24598411)
chr7 (303-347)||(35906382-35906426)
chr7 (303-346)||(11594017-11594060)
chr7 (303-346)||(13859190-13859233)
chr7 (303-346)||(31682784-31682827)
chr7 (303-346)||(32631633-32631676)
chr7 (303-346)||(33073009-33073052)
chr7 (303-346)||(43491365-43491408)
chr7 (303-346)||(44855354-44855397)
chr7 (303-345)||(34869477-34869519)
[»] chr4 (16 HSPs)
chr4 (303-346)||(27450361-27450404)
chr4 (303-346)||(31959996-31960039)
chr4 (303-346)||(37797909-37797952)
chr4 (303-346)||(39100718-39100760)
chr4 (303-346)||(48174275-48174318)
chr4 (303-346)||(52569697-52569740)
chr4 (303-345)||(50287019-50287061)
chr4 (303-344)||(8286488-8286529)
chr4 (303-344)||(56375347-56375388)
chr4 (303-346)||(436286-436329)
chr4 (303-346)||(27983250-27983293)
chr4 (303-346)||(33227266-33227309)
chr4 (303-346)||(43433981-43434024)
chr4 (303-346)||(53707851-53707894)
chr4 (304-346)||(4440911-4440953)
chr4 (303-341)||(20601833-20601871)
[»] chr3 (9 HSPs)
chr3 (303-346)||(51447892-51447935)
chr3 (303-344)||(22129-22170)
chr3 (303-346)||(5168889-5168932)
chr3 (303-346)||(47233778-47233821)
chr3 (307-346)||(53519653-53519692)
chr3 (302-346)||(54279076-54279120)
chr3 (303-346)||(25191434-25191477)
chr3 (303-346)||(35033203-35033246)
chr3 (303-344)||(38060488-38060529)
[»] scaffold0570 (1 HSPs)
scaffold0570 (303-346)||(1130-1173)
[»] chr6 (7 HSPs)
chr6 (303-346)||(5258330-5258373)
chr6 (303-346)||(10100041-10100084)
chr6 (303-346)||(7133803-7133846)
chr6 (303-346)||(7136726-7136769)
chr6 (307-346)||(20427818-20427857)
chr6 (303-346)||(30031313-30031356)
chr6 (303-346)||(35043623-35043666)
[»] chr5 (12 HSPs)
chr5 (303-346)||(1275321-1275364)
chr5 (303-346)||(2075656-2075699)
chr5 (303-346)||(4496441-4496484)
chr5 (303-346)||(14665771-14665814)
chr5 (303-346)||(20456830-20456873)
chr5 (303-346)||(38685024-38685067)
chr5 (306-346)||(24178570-24178610)
chr5 (303-346)||(1287761-1287804)
chr5 (303-346)||(12492566-12492609)
chr5 (303-346)||(16347560-16347603)
chr5 (304-346)||(2915677-2915719)
chr5 (221-249)||(794432-794460)
[»] scaffold0045 (1 HSPs)
scaffold0045 (307-346)||(86791-86830)
[»] scaffold0018 (1 HSPs)
scaffold0018 (303-346)||(31525-31568)
[»] scaffold0692 (1 HSPs)
scaffold0692 (314-346)||(4704-4736)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 39029364 - 39029627
Alignment:
Q  11 cacagagttatgatgaatttagtgaatgtgtttt-gtttgcatgcacgcctatttatgtgatcatgtgccccatcataaagtagttaatatactnnnnnn 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          
T  39029364 cacagagttatgatgaatttagtgaatgtgtttttgtttgcatgcacgcctatttatgtgatcatgtgccctatcataaagtagttaatatactaaaaaa 39029463  T
Q  110 nctcttggatagacacaaacatttgagctcgtgtaatagtcatt-----ctttgaatgtgcaataaataagcacaatagttttatgtatcaaaatttcga 204  Q
     |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39029464 actcttggatagacacaaacatttgagctcgtgtaatagtcattttggtctttgaatgtgcaataaataagcacaatagttttatgtatcaaaatttcga 39029563  T
Q  205 gagtccttaattgtgtattatattagttaaaatagtcttttacgtgcaaatgttagtaaatata 268  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  39029564 gagtccttaattatgtattatgttagtaaaaatagtcttttacgtgcaaatgttagtaaatata 39029627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 39029624 - 39029681
Alignment:
Q  289 tatattgacacatcgtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  39029624 tatattgacgcatcgtagagaggagacccgtagatgccgttgtaagaagagtagatca 39029681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 41197453 - 41197410
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41197453 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 41197410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 36183508 - 36183549
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagat 344  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  36183508 gtagagagaagacccgtagatgccgtggtaagaagagtagat 36183549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 451873 - 451830
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||    
T  451873 gtagagaaaagacccgtagatgccgtggtaagaagagtagatca 451830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 3243878 - 3243835
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||    
T  3243878 gtagagagaagacccgtagatgccgtggtaagaagaatagatca 3243835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 3866129 - 3866172
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||    
T  3866129 gtagagagaagacccgtagatgtcgtggtaagaagagtagatca 3866172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 7326385 - 7326342
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| | ||||||||||| |||||||||||||||||    
T  7326385 gtagagagaagacctgtagatgccgtggtaagaagagtagatca 7326342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 12734760 - 12734799
Alignment:
Q  307 agagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  12734760 agagaagacccgtagatgccgtggtaagaagagtagatca 12734799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 23997671 - 23997714
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||    
T  23997671 gtagaaagaagacccgtagatgtcgttgtaagaagagtagatca 23997714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 24583857 - 24583814
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||| || |||||||||||||||||    
T  24583857 gtagagagaagacccgtagatgctgtcgtaagaagagtagatca 24583814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 25834738 - 25834781
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| | || ||||||||||||||||||||||||||    
T  25834738 gtagagagaagacctgtggatgccgttgtaagaagagtagatca 25834781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 38429945 - 38429984
Alignment:
Q  307 agagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  38429945 agagaagacccgtatatgccgttgtaagaagagtagatca 38429984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 45367850 - 45367807
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||    
T  45367850 gtagagagaagacccgtagatgccgttgttagaagggtagatca 45367807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 11992332 - 11992290
Alignment:
Q  304 tagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||| |||||||||||||||| |||||||| |||||    
T  11992332 tagagagaagacccgtagatgccgttgttagaagagtggatca 11992290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 41763265 - 41763224
Alignment:
Q  305 agagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||| | ||||||||||||||||||| |||||||||    
T  41763265 agagagaagacctgtagatgccgttgtaagaaaagtagatca 41763224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 12025847 - 12025889
Alignment:
Q  304 tagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12025847 tagagagaagatccgtagatgccgttgtaagaagagtagatca 12025889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 42854229 - 42854186
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  42854229 gtagagagaagacccgtagatgccgttgtaagaagagtagatca 42854186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 11523948 - 11523905
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  11523948 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 11523905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 12491363 - 12491320
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  12491363 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 12491320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 21121203 - 21121246
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  21121203 gtagagagaagacccgtagatgccgtcgtaagaagagtagatca 21121246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 36545206 - 36545249
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  36545206 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 36545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 40813381 - 40813424
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  40813381 gtagagagaagatctgtagatgccgtggtaagaagagtagatca 40813424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 342
Target Start/End: Complemental strand, 6510653 - 6510614
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtag 342  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  6510653 gtagagagaagatctgtagatgccgtcgtaagaagagtag 6510614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 18125230 - 18125273
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||    
T  18125230 gtagagagaagacccgtagatgccgtcgtaagaatagtagatca 18125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 36395174 - 36395131
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| | ||||||||||| |||||||||||||||||    
T  36395174 gtagagagaagacctgtagatgccgtggtaagaagagtagatca 36395131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 696326 - 696370
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatcat 347  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  696326 gtagagagaagacccgtagatgccgttgtaagaagagtagatcat 696370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 8671975 - 8672018
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  8671975 gtagagagaagatccgtagatgccgtggtaagaagagtagatca 8672018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 1210802 - 1210845
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  1210802 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 1210845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 4001680 - 4001637
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  4001680 gtagagaggagacccgtagatgccgttgtaagaagagtagatca 4001637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 8391829 - 8391872
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  8391829 gtagagaggagacccgtagatgccgttgtaagaagagtagatca 8391872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 9592791 - 9592834
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  9592791 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 9592834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 15085991 - 15086034
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  15085991 gtagagagaagacccgtagatgccgttgttagaagagtagatca 15086034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 30202355 - 30202312
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  30202355 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 30202312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 34792574 - 34792531
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  34792574 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 34792531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 32082968 - 32082927
Alignment:
Q  305 agagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  32082968 agagaggagacccgtagatgccgttgtaagaagagtagatca 32082927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 49347616 - 49347575
Alignment:
Q  305 agagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  49347616 agagagaagacccgtagatgccgtggtaagaagagtagatca 49347575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 4029179 - 4029222
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||    
T  4029179 gtagagagaagacccgtagatgccgtggtaagaagaatagatca 4029222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 51602113 - 51602156
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||    
T  51602113 gtagagagaagacccgtagatgtcgtggtaagaagagtagatca 51602156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 25979456 - 25979414
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatc 345  Q
    |||||||||||| |||||||||| |||||||| ||||||||||    
T  25979456 gtagagagaagacccgtagatgctgttgtaaggagagtagatc 25979414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 27520429 - 27520385
Alignment:
Q  302 cgtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||   ||||||| |||||||||||||||||||||    
T  27520429 cgtagagagaagacatgtagatgtcgttgtaagaagagtagatca 27520385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 51440990 - 51440950
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtaga 343  Q
    |||||||||||| ||| ||||||||| ||||||||||||||    
T  51440990 gtagagagaagacccggagatgccgtggtaagaagagtaga 51440950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 2885947 - 2885904
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  2885947 gtagagagaagatccgtagatgccgttgtacgaagagtagatca 2885904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 29650441 - 29650484
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  29650441 gtagagagaagacccgtagatgccgttgtaagaagagtagatca 29650484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 43281731 - 43281774
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  43281731 gtagagagaagacccgtagatgccgttgtaagaagagtagatca 43281774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 45836705 - 45836662
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  45836705 gtagagagaagacccgtagatgccgttgtaagaagagtagatca 45836662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 12841500 - 12841457
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  12841500 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 12841457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 15682231 - 15682274
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  15682231 gtagagagaagatccatagatgccgtcgtaagaagagtagatca 15682274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 31005280 - 31005323
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  31005280 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 31005323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 33350031 - 33349988
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  33350031 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 33349988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 36652049 - 36652092
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  36652049 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 36652092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 37618002 - 37618045
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  37618002 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 37618045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 38607061 - 38607104
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  38607061 gtagagagaagacccgtagatgccgttgttagaagagtagatca 38607104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 24598411 - 24598369
Alignment:
Q  304 tagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  24598411 tagagagcagacccgtagatgccgttgtaagaagagtagatca 24598369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 35906426 - 35906382
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatcat 347  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||    
T  35906426 gtagagagaagacccgtagatgccgtggtaagaagagtatatcat 35906382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 11594017 - 11594060
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||| | |||||||||||||||||    
T  11594017 gtagagagaagacccgtagatgccatggtaagaagagtagatca 11594060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 13859233 - 13859190
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||| || |||||||||||||||||    
T  13859233 gtagagagaagacccgtagatgctgtcgtaagaagagtagatca 13859190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 31682827 - 31682784
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  31682827 gtagagagaagacccgtagatgccgtcataagaagagtagatca 31682784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 32631633 - 32631676
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||| |||||||| |||||    
T  32631633 gtagagagaagacccgtagatgccgttgttagaagagtggatca 32631676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 33073009 - 33073052
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||    
T  33073009 gtagagagaagacccgtagatgtcgtggtaagaagagtagatca 33073052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 43491365 - 43491408
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||    
T  43491365 gtagagagaagacccgtagatgccgtcgtaagaagagttgatca 43491408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 44855397 - 44855354
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  44855397 gtagagagaagacccgtagatgccgtcataagaagagtagatca 44855354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 34869477 - 34869519
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatc 345  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||    
T  34869477 gtagagagaagacccgtaaatgccgtggtaagaagagtagatc 34869519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 27450404 - 27450361
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  27450404 gtagagagaagacccgtagatgccgttgtaagaagagtagatca 27450361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 31960039 - 31959996
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  31960039 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 31959996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 37797909 - 37797952
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  37797909 gtagagagaagattcgtagatgccgtcgtaagaagagtagatca 37797952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 39100760 - 39100718
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  39100760 gtagagagaagatccgtagatg-cgttgtaagaagagtagatca 39100718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 48174318 - 48174275
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  48174318 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 48174275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 52569740 - 52569697
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  52569740 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 52569697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 50287019 - 50287061
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatc 345  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  50287019 gtagagagaagacccgtagatgccgtggtaagaagagtagatc 50287061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 8286488 - 8286529
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagat 344  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  8286488 gtagagagaagacccgtagatgccgtcgtaagaagagtagat 8286529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 56375347 - 56375388
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagat 344  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  56375347 gtagagagaagacccgtagatgccgtggtaagaagagtagat 56375388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 436286 - 436329
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| | ||||||||||| |||||||||||||||||    
T  436286 gtagagagaagacctgtagatgccgtggtaagaagagtagatca 436329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 27983250 - 27983293
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||    
T  27983250 gtagagagaagactcgtagatgccgttgtaagaagagtatatca 27983293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 33227266 - 33227309
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  33227266 gtagagagaagacccgtagatgccgtgttaagaagagtagatca 33227309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 43433981 - 43434024
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||    
T  43433981 gtagagagaagacccgtagatgccgtggtaagaagagtaaatca 43434024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 53707851 - 53707894
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||    
T  53707851 gtagagagaagacccgtagatgccgtggtaagaagagtatatca 53707894  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 4440911 - 4440953
Alignment:
Q  304 tagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||| |||||||||| || |||||||||||||||||    
T  4440911 tagagagaagacccgtagatgctgtggtaagaagagtagatca 4440953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 20601871 - 20601833
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagta 341  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  20601871 gtagagagaagacctgtagatgccgttgtaagaagagta 20601833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 51447935 - 51447892
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  51447935 gtagagagaagatccgtagatgccgtggtaagaagagtagatca 51447892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 22129 - 22170
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagat 344  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  22129 gtagagagaagacccgtagatgccgttgtaagaagagtagat 22170  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 5168889 - 5168932
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  5168889 gtagagagaagacccgtagatgccgttgttagaagagtagatca 5168932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 47233821 - 47233778
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||||| ||||||||||||||    
T  47233821 gtagagagaagacccgtagatgccgttgttagaagagtagatca 47233778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 53519653 - 53519692
Alignment:
Q  307 agagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  53519653 agagaagaaccgtagatgccgttgtaagaagagtagatca 53519692  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 54279076 - 54279120
Alignment:
Q  302 cgtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||    
T  54279076 cgtagagagaagacccgtagatgccgtggtaaaaagagtagatca 54279120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 25191434 - 25191477
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||    
T  25191434 gtagagagaagacccgtagataccgttgtaagaagagaagatca 25191477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 35033203 - 35033246
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||    
T  35033203 gtagagagaagacccgtagatgccattgtaagaagagtaaatca 35033246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 38060488 - 38060529
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagat 344  Q
    |||||||||||| | ||||||||||| |||||||||||||||    
T  38060488 gtagagagaagacctgtagatgccgtcgtaagaagagtagat 38060529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 1173 - 1130
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  1173 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 5258373 - 5258330
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  5258373 gtagagagaagacccgtagattccgttgtaagaagagtagatca 5258330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 10100084 - 10100041
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  10100084 gtagagagaagactcgtagatgccgttgtaagaagagtagatca 10100041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 7133803 - 7133846
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||    
T  7133803 gtagagagaagacccgaagatgccgtggtaagaagagtagatca 7133846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 7136726 - 7136769
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||    
T  7136726 gtagagagaagacccgaagatgccgtggtaagaagagtagatca 7136769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 20427857 - 20427818
Alignment:
Q  307 agagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  20427857 agagaagacccgtagatgccgttgtaagaagagtaaatca 20427818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 30031313 - 30031356
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| || |||||||||| |||||||||||||||||    
T  30031313 gtagagagaagacccatagatgccgtcgtaagaagagtagatca 30031356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 35043666 - 35043623
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||| | ||||||||||||||||||||| |||||||||    
T  35043666 gtagagagaatacccgtagatgccgttgtaagaaaagtagatca 35043623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 1275321 - 1275364
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||||||||| ||||||| |||||||||||||||||    
T  1275321 gtagagagaagatccgtaaatgccgtggtaagaagagtagatca 1275364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 2075699 - 2075656
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  2075699 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 2075656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 4496441 - 4496484
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  4496441 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 4496484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 14665771 - 14665814
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  14665771 gtagagagaagacccgtagatgccgtcgtaagaagagtagatca 14665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 20456830 - 20456873
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  20456830 gtagagagaagacccgtagatgccgtggtaagaagagtagatca 20456873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 38685024 - 38685067
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  38685024 gtagagagaagacccgtagatgccgtcgtaagaagagtagatca 38685067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 24178570 - 24178610
Alignment:
Q  306 gagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  24178570 gagagaagacccgtagatgccgtggtaagaagagtagatca 24178610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 1287804 - 1287761
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||  |||||||||||| |||||||||||||||||    
T  1287804 gtagagagaagacacgtagatgccgtggtaagaagagtagatca 1287761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 12492609 - 12492566
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  12492609 gtagagagaagacccgtagatgccgtgttaagaagagtagatca 12492566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 16347603 - 16347560
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  16347603 gtagagagaagacccgtagatgcctttgcaagaagagtagatca 16347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 2915719 - 2915677
Alignment:
Q  304 tagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||| ||||||||||| | |||||||||||||||||    
T  2915719 tagagagaagacccgtagatgccttggtaagaagagtagatca 2915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 794432 - 794460
Alignment:
Q  221 attatattagttaaaatagtcttttacgt 249  Q
    |||||||||||||||||||||||||||||    
T  794432 attatattagttaaaatagtcttttacgt 794460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 86830 - 86791
Alignment:
Q  307 agagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  86830 agagaagacccgtagatgccgtcgtaagaagagtagatca 86791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 31525 - 31568
Alignment:
Q  303 gtagagagaagatccgtagatgccgttgtaagaagagtagatca 346  Q
    |||||||||||| ||||||||||| | |||||||||||||||||    
T  31525 gtagagagaagacccgtagatgccatggtaagaagagtagatca 31568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 4704 - 4736
Alignment:
Q  314 atccgtagatgccgttgtaagaagagtagatca 346  Q
    ||||||||||||||| |||||||||||||||||    
T  4704 atccgtagatgccgtcgtaagaagagtagatca 4736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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