View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14394_high_6 (Length: 358)
Name: NF14394_high_6
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 5526879 - 5527160
Alignment:
| Q |
61 |
tagtgattttagtgcatgttcactagatttgctaaaataatgaagatcatagtgatttcagcaaatccaccatcaataatctggaaaatgtaaatattta |
160 |
Q |
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| T |
5526879 |
tagtaattttagtgcatgttcactagatttgctaaaataacgaagatcatagtgatttcagcaaatccaccatcaataatctggaaaatgtaaatattta |
5526978 |
T |
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| Q |
161 |
taattcattatatttcgttgtttcacattgattatctatacttttcgagttgtctacttgagagatagtcactttggtaaaaaagaaataaaacaagttt |
260 |
Q |
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| T |
5526979 |
taattcattagatttcgttgtttcacattcattatctatactttccgagttgtctacttgagagatagccactttgataaaaaagaaataaaacaagttt |
5527078 |
T |
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| Q |
261 |
ttataataaaagatacatatgttttgttgccgacttgataattagtctcatagaggaaccaaaagatctaagtcgtggtata |
342 |
Q |
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| T |
5527079 |
ttataataaaagatacatatgttttgttgccgacttgataattagtctcatagaggaaccaaaagacctaagttgtggtata |
5527160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 5526132 - 5526187
Alignment:
| Q |
9 |
taagttttgattgccttggcttattgtccaaggacttatgagtgacataaagtagt |
64 |
Q |
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| T |
5526132 |
taagttttgattgccttggcttattgtccaaggacttatgagtgacataaagtagt |
5526187 |
T |
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