View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14394_high_8 (Length: 332)
Name: NF14394_high_8
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 51418270 - 51417972
Alignment:
| Q |
19 |
catgtaatgtctgtaacattgttagggagacaccactctgtttctgtgtctagtttcattaatgattagcaatttatgggagagaaagaacagcaaaatt |
118 |
Q |
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| T |
51418270 |
catgtaatgtctgtaacattgttagggagacaccaatctgtttctgtgtctagtttcattaatgattagcaatttatgggagagaaagaacagcaaaatt |
51418171 |
T |
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| Q |
119 |
gtaacaaaggcaatgggattattggttaagatctgtgttagttttgtgagggaagacttgtgagttatactcctatgaatttaaaggaaagaaaaagtta |
218 |
Q |
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| T |
51418170 |
gtaacaaaggcaatgggattattggttaagatctgtgttagttttgtgagggaagacttgtgagt--tactcctatgaatttaaaggaaagaaaaagtta |
51418073 |
T |
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| Q |
219 |
ggacaagggcaaagaaagagagagaatgttggtttgatttgatgttgctgttttggatattgaagaatattgataggtagctatagtagtgaagtataat |
318 |
Q |
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| T |
51418072 |
ggacaagggcaaagaaagagagagaatgttggtttgatttgatgttgctgttttggatattgaagaatattgttaggtagctatagtagtgaagtataat |
51417973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 51413217 - 51413158
Alignment:
| Q |
19 |
catgtaatgtctgtaacattgttagggagacaccactctgtttctgtgtctagtttcatt |
78 |
Q |
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| T |
51413217 |
catgtaatgtctgtcacattattagggagacagcactctgtttctgtatgaagtttcatt |
51413158 |
T |
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