View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14394_high_9 (Length: 320)
Name: NF14394_high_9
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_high_9 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 51417687 - 51417994
Alignment:
| Q |
13 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51417687 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttc |
51417786 |
T |
|
| Q |
113 |
tttataccagtttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51417787 |
tttataccagtttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcat |
51417886 |
T |
|
| Q |
213 |
gccaaagaaaaattaattaattaaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaactgtcatgattatacttcacta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51417887 |
gccaaagaaaaattaattaattaaaaggagttccaataacatagaaagaatggaaaaagaaggacgatcacaataaaagtgtcatgattatacttcacta |
51417986 |
T |
|
| Q |
313 |
ctatagct |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
51417987 |
ctatagct |
51417994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 51412871 - 51412949
Alignment:
| Q |
235 |
aaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaactgtcatgattatacttcactac |
313 |
Q |
| |
|
||||| ||||||||||||| ||||| | |||||||||| ||| | |||||| ||||||||||||||||| |||||||| |
|
|
| T |
51412871 |
aaaagaagttccaataacaaggaaagtaaggaaaaagaaagacaagcacaatgaaactgtcatgattatagttcactac |
51412949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 29323346 - 29323615
Alignment:
| Q |
13 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
29323346 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgaagtcaatttcaatcgaatcattttactaacttttaattgctgataagtttc |
29323445 |
T |
|
| Q |
113 |
tttataccagtttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcat |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
29323446 |
tttataccactttgaactctttagcaccaagacagaacttgttcaaggacacatttaattaaattg--tcaactaacgaaaattaac------aaagcat |
29323537 |
T |
|
| Q |
213 |
gccaaagaaaaattaattaattaaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaa |
290 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
29323538 |
gccaaagaaaaataaattaattaaaaggagttccaataacatagaaagaaaggaaaaagaaggacagtcacaataaaa |
29323615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University