View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_low_12 (Length: 318)

Name: NF14394_low_12
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_low_12
NF14394_low_12
[»] chr3 (1 HSPs)
chr3 (10-300)||(51461843-51462133)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 51462133 - 51461843
Alignment:
Q  10 aagaatataagtacgttgaagtaaaagtttgtataaacattattagcaataactatagaagaattaagaatgttgcgatgacacagtataaacttttact 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  51462133 aagaatataagtacgttgaagtaaaagtttgtataaaaattattagtaatatttatagaagaattaagaatgttgcgatgacacggtataaacttttact 51462034  T
Q  110 tataaactcttgagtgacaaagaatgttgatattaaacataaacttttacttacgataccaacatcatattcaatgcaaaatgctctcatcttaatcaaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51462033 tataaactcttgagtgacaaagaatgttgatattaaacataaacttttacttacaataccaacatcatattcaatgcaaaatgctctcatcttaatcaaa 51461934  T
Q  210 tcatcacaaactacctttccaatatctccaccaacaatattctcctgaattgttttcattgacgagtagtttacaaattagataacattca 300  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51461933 tcatcacaaacaacctttccaatatctccaccaataatattttcctgaattgttttcattgatgagtagtttacaaattagataacattca 51461843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University