View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_low_15 (Length: 289)

Name: NF14394_low_15
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_low_15
NF14394_low_15
[»] chr4 (6 HSPs)
chr4 (5-259)||(21833445-21833699)
chr4 (66-182)||(53761012-53761128)
chr4 (122-247)||(7308230-7308355)
chr4 (201-249)||(1601177-1601225)
chr4 (200-249)||(371298-371347)
chr4 (195-247)||(8183616-8183668)
[»] chr1 (2 HSPs)
chr1 (44-248)||(19467623-19467827)
chr1 (205-247)||(7554870-7554912)
[»] chr6 (2 HSPs)
chr6 (44-153)||(6588459-6588568)
chr6 (51-182)||(6416809-6416940)
[»] chr3 (2 HSPs)
chr3 (51-188)||(51763583-51763720)
chr3 (51-182)||(13469857-13469988)
[»] chr7 (1 HSPs)
chr7 (59-172)||(10615440-10615553)
[»] chr5 (2 HSPs)
chr5 (44-153)||(28532580-28532689)
chr5 (201-249)||(41900804-41900852)
[»] chr8 (3 HSPs)
chr8 (115-168)||(17635904-17635957)
chr8 (115-188)||(18318891-18318964)
chr8 (115-249)||(18314885-18315019)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 21833445 - 21833699
Alignment:
Q  5 taccccttatatagtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  21833445 taccccttatatggtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttc 21833544  T
Q  105 ccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgc 204  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||  |||||||||    
T  21833545 ccataaacaatcaatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgc 21833644  T
Q  205 ttcagctctcctcgagagaccaacattgagttctttatccttttctagtagtagc 259  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  21833645 ttcagctctccgtgagagaccaacattgagttctttatccttttctggtagtagc 21833699  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 53761012 - 53761128
Alignment:
Q  66 cacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccat 165  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||| |   ||||| |||||||||||||| ||||||||||| |||||| |||| | |||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtcat 53761111  T
Q  166 catgtttgattgtgatc 182  Q
    | ||||| | |||||||    
T  53761112 cttgtttaactgtgatc 53761128  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 7308355 - 7308230
Alignment:
Q  122 cttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctcctcgaga 221  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||| || || ||| ||||| |||      ||||||||||| | ||||| |  ||||    
T  7308355 cttttccacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgaga 7308256  T
Q  222 gaccaacattgagttctttatccttt 247  Q
    ||||||||||| | ||||||||||||    
T  7308255 gaccaacattgcgctctttatccttt 7308230  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  201 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 249  Q
    ||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 371347 - 371298
Alignment:
Q  200 attgcttcagctctcctcgagagaccaacattgagttctttatccttttc 249  Q
    |||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  371347 attgcttctgctctccttcagagaccaacattgacctctttatccttttc 371298  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 8183616 - 8183668
Alignment:
Q  195 caggcattgcttcagctctcctcgagagaccaacattgagttctttatccttt 247  Q
    ||||||||||||| ||  | || ||||||||||||||||| ||||||||||||    
T  8183616 caggcattgcttctgcattacttgagagaccaacattgaggtctttatccttt 8183668  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 248
Target Start/End: Original strand, 19467623 - 19467827
Alignment:
Q  44 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 143  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| | |    ||||  |||| |||||||| || ||||    
T  19467623 ggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaatt 19467722  T
Q  144 gtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctcctcgagagaccaacattgagttctttatc 243  Q
    |||||||||||||||| |  | |||||||   ||||||||||| |      | || |||||||| ||| |||  ||||||||||||||||| ||||||||    
T  19467723 gtaagcttcttgaagaggttaccatgttttggtgtgatcaaatgactattgctggaattgcttctgctatccgtgagagaccaacattgaggtctttatc 19467822  T
Q  244 ctttt 248  Q
     ||||    
T  19467823 gtttt 19467827  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 7554912 - 7554870
Alignment:
Q  205 ttcagctctcctcgagagaccaacattgagttctttatccttt 247  Q
    |||||||||||  ||||||||||||||||| ||||||||||||    
T  7554912 ttcagctctccatgagagaccaacattgaggtctttatccttt 7554870  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 6588459 - 6588568
Alignment:
Q  44 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 143  Q
    |||||| | ||||| ||||| |||||| ||||||| || |||||||||||||||  ||| ||||| |||| |||||| |||||||||||||| || ||||    
T  6588459 ggggtacaggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaatt 6588558  T
Q  144 gtaagcttct 153  Q
    ||||||||||    
T  6588559 gtaagcttct 6588568  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 6416940 - 6416809
Alignment:
Q  51 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 150  Q
    ||||||| |||||||||||| | |||||||| || |||||||||||| | || ||  ||||||  ||||| |||||||| || ||  | || ||||||||    
T  6416940 aagctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagct 6416841  T
Q  151 tcttgaagaagccatcatgtttgattgtgatc 182  Q
    ||| ||||||| ||||||||||  ||||||||    
T  6416840 tctcgaagaagtcatcatgtttagttgtgatc 6416809  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 51763583 - 51763720
Alignment:
Q  51 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 150  Q
    |||| ||||||||||| ||| ||||||| || ||||||||| |||||||||  |||||||||| |||||| ||||||||| |  ||   || ||||||||    
T  51763583 aagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagct 51763682  T
Q  151 tcttgaagaagccatcatgtttgattgtgatcaaataa 188  Q
    |||  |||| | |||||||||||| |||||||||||||    
T  51763683 tctccaagatgtcatcatgtttgactgtgatcaaataa 51763720  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 13469857 - 13469988
Alignment:
Q  51 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 150  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| | || || |||||||  | ||| ||||||||||| ||  | || ||||||||    
T  13469857 aagctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagct 13469956  T
Q  151 tcttgaagaagccatcatgtttgattgtgatc 182  Q
    ||| ||||||| ||||||||||  ||||||||    
T  13469957 tctcgaagaagtcatcatgtttagttgtgatc 13469988  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 10615553 - 10615440
Alignment:
Q  59 tcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaag 158  Q
    |||||| ||||| | |||||||| ||||||||||||||| | || | |||||||| |||||| ||| |||||||| |  | || ||||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttcttgaag 10615454  T
Q  159 aagccatcatgttt 172  Q
    | | |||| |||||    
T  10615453 aggtcatcttgttt 10615440  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 28532689 - 28532580
Alignment:
Q  44 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 143  Q
    |||||| | ||||| |||||| |||||  ||||||||| |||||||||||||||  ||| ||||| ||||  ||||| |||||||||||||| |  || |    
T  28532689 ggggtagaggctctctcactttcacttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaact 28532590  T
Q  144 gtaagcttct 153  Q
    ||||||||||    
T  28532589 gtaagcttct 28532580  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 41900804 - 41900852
Alignment:
Q  201 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 249  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttc 41900852  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 17635904 - 17635957
Alignment:
Q  115 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 168  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||||||||||    
T  17635904 tcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcat 17635957  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 18318891 - 18318964
Alignment:
Q  115 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 188  Q
    |||||| ||| |||||||||| ||||| || |||||||| ||||| ||||||||  |||| |||||||||||||    
T  18318891 tcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatacttgactgtgatcaaataa 18318964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 18314885 - 18315019
Alignment:
Q  115 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataagaggaacaggcattgcttcagctctc 214  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||||  | ||||| ||| | ||| |||||||||      | || |||||||  ||||||    
T  18314885 tcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctc 18314984  T
Q  215 ctcgagagaccaacattgagttctttatccttttc 249  Q
    |  ||||||||||| ||||| ||||||||| ||||    
T  18314985 cgtgagagaccaactttgaggtctttatccatttc 18315019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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