View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_low_17 (Length: 257)

Name: NF14394_low_17
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_low_17
NF14394_low_17
[»] chr7 (6 HSPs)
chr7 (10-149)||(3704488-3704627)
chr7 (10-96)||(3696943-3697029)
chr7 (43-149)||(21017604-21017710)
chr7 (43-149)||(37348865-37348971)
chr7 (93-149)||(3697755-3697811)
chr7 (206-245)||(3704683-3704722)
[»] chr5 (1 HSPs)
chr5 (43-147)||(13163731-13163835)
[»] chr8 (2 HSPs)
chr8 (43-149)||(27824329-27824435)
chr8 (43-149)||(26720072-26720178)
[»] chr6 (1 HSPs)
chr6 (43-146)||(10711742-10711845)
[»] scaffold0288 (1 HSPs)
scaffold0288 (43-149)||(19601-19707)
[»] chr1 (1 HSPs)
chr1 (43-147)||(35973099-35973203)
[»] chr3 (1 HSPs)
chr3 (43-149)||(22942468-22942574)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 3704488 - 3704627
Alignment:
Q  10 taagttataaacgttttagttttggtttctgcctacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgat 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3704488 taagttataaacgttttagttttggtttttgcctacaaaaatgtgtatgtggcaaacagagggtgatgtggtggcgtgtgacatggcacacgatgttgat 3704587  T
Q  110 gtgtcgttctaaatgatgagtcacaaagttagagggacca 149  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  3704588 gtgtctttctaaatgatgagtcacaaagttagagggacca 3704627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 3696943 - 3697029
Alignment:
Q  10 taagttataaacgttttagttttggtttctgcctacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggc 96  Q
    ||||||||||||||||||||||||||  || |||||||||||||  |||||||||||| |||||||||||| || ||||||||||||    
T  3696943 taagttataaacgttttagttttggtccctacctacaaaaatgttaatgtggcaaacaaagggtgatgtggcggcgtgtgacatggc 3697029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 21017710 - 21017604
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    |||||||| ||  |||||||||| ||||| ||| || ||| |||||||||||||| || | ||||||||||||||| | ||| |||||||||||||||||    
T  21017710 tacaaaaacgtccatgtggcaaatagaggatgacgtcgtgatgtgtgacatggcagacaacgttgatgtgtcgttccatatgctgagtcacaaagttaga 21017611  T
Q  143 gggacca 149  Q
    |||||||    
T  21017610 gggacca 21017604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 37348865 - 37348971
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    ||||||||||| ||||||| |||| |||| |||  ||| |  ||||||| ||||| | || ||||||||||| ||| | ||| ||||||||||| |||||    
T  37348865 tacaaaaatgtctatgtggaaaacggaggatgacatggcgacgtgtgacgtggcagatgacgttgatgtgtcattccatatgctgagtcacaaaattaga 37348964  T
Q  143 gggacca 149  Q
    |||||||    
T  37348965 gggacca 37348971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 3697755 - 3697811
Alignment:
Q  93 tggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttagagggacca 149  Q
    ||||||||||   |||||||||||| || ||| ||||||||||||||||||||||||    
T  3697755 tggcacacgacactgatgtgtcgttttagatgttgagtcacaaagttagagggacca 3697811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 3704683 - 3704722
Alignment:
Q  206 attcacaatttaaaaacatcggctcttccatcttgttcat 245  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  3704683 attcacaatttaaaaacattggctcttccatcttcttcat 3704722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 13163835 - 13163731
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    ||||||||| | ||| || || ||||||| |||||||||||  |||||||||||| |||||||||||||||||||| | || ||||||| ||||||||||    
T  13163835 tacaaaaatatatatatgacacacagaggatgatgtggtggcatgtgacatggcagacgatgttgatgtgtcgttccagataatgagtcgcaaagttaga 13163736  T
Q  143 gggac 147  Q
    |||||    
T  13163735 gggac 13163731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 27824435 - 27824329
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    |||||||| || |||||||||||| |||| ||| ||||| ||||||||  ||| | | |||||||||||||| ||||| ||| |||||||||||||||||    
T  27824435 tacaaaaacgtatatgtggcaaacggaggttgacgtggttgtgtgtgatgtggtagatgatgttgatgtgtcattctagatgttgagtcacaaagttaga 27824336  T
Q  143 gggacca 149  Q
    |||||||    
T  27824335 gggacca 27824329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 26720178 - 26720072
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    |||||||| || ||||||||||||||||  | | |||| |  ||||||||||| | |||| ||||||||||||||| | ||| |||||||||||||||||    
T  26720178 tacaaaaacgtctatgtggcaaacagagcataacgtggcgacgtgtgacatggaaaacgacgttgatgtgtcgttccatatgctgagtcacaaagttaga 26720079  T
Q  143 gggacca 149  Q
    |||||||    
T  26720078 gggacca 26720072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 10711845 - 10711742
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    ||||||||| | ||||||||||| ||||| |||||||| |   |||||  ||||| |||| ||||| ||||| ||  ||||| |||||||||||||||||    
T  10711845 tacaaaaatatttatgtggcaaatagaggatgatgtggcgacatgtgatgtggcagacgacgttgaagtgtcatttcaaatgttgagtcacaaagttaga 10711746  T
Q  143 ggga 146  Q
    ||||    
T  10711745 ggga 10711742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 19601 - 19707
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    |||||||| || ||||||||||| ||||| |||  |||    ||||||||| ||| |||| ||||| ||||||||| | ||| |||||||||||||||||    
T  19601 tacaaaaacgtctatgtggcaaatagaggatgacatggcaacgtgtgacattgcatacgacgttgacgtgtcgttccatatgctgagtcacaaagttaga 19700  T
Q  143 gggacca 149  Q
     ||||||    
T  19701 aggacca 19707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 35973203 - 35973099
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    |||||||| || |||||||||||| |||| ||| ||||    ||||||| ||||| |||| ||||||||||||||| | | |  ||||||||||||| ||    
T  35973203 tacaaaaacgtctatgtggcaaacggaggctgacgtggcaacgtgtgacgtggcagacgacgttgatgtgtcgttccataagccgagtcacaaagttgga 35973104  T
Q  143 gggac 147  Q
    |||||    
T  35973103 gggac 35973099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 22942468 - 22942574
Alignment:
Q  43 tacaaaaatgtgtatgtggcaaacagagggtgatgtggtggtgtgtgacatggcacacgatgttgatgtgtcgttctaaatgatgagtcacaaagttaga 142  Q
    |||||||| || ||||||||||||| ||| ||| ||||   |||||||  ||| | ||||| |||||||||| ||| | |||  |||||||||||||| |    
T  22942468 tacaaaaaagtctatgtggcaaacataggatgacgtggcaatgtgtgatgtggaagacgatattgatgtgtcattccatatgccgagtcacaaagttaaa 22942567  T
Q  143 gggacca 149  Q
    |||||||    
T  22942568 gggacca 22942574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University