View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_low_22 (Length: 235)

Name: NF14394_low_22
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_low_22
NF14394_low_22
[»] chr8 (2 HSPs)
chr8 (1-227)||(11485382-11485608)
chr8 (1-227)||(44957188-44957413)
[»] chr3 (34 HSPs)
chr3 (1-227)||(10500918-10501144)
chr3 (15-221)||(11781495-11781701)
chr3 (15-222)||(10517834-10518041)
chr3 (75-222)||(10433617-10433764)
chr3 (1-139)||(13333336-13333474)
chr3 (1-139)||(13344521-13344659)
chr3 (78-222)||(11769583-11769727)
chr3 (1-139)||(13171463-13171601)
chr3 (40-220)||(10580952-10581132)
chr3 (75-222)||(9839210-9839357)
chr3 (75-222)||(9850088-9850235)
chr3 (40-127)||(10363336-10363423)
chr3 (40-118)||(10261151-10261229)
chr3 (45-227)||(11148397-11148579)
chr3 (62-227)||(8861630-8861795)
chr3 (75-204)||(10375418-10375547)
chr3 (62-227)||(11130586-11130751)
chr3 (62-118)||(10032456-10032512)
chr3 (75-221)||(10077619-10077765)
chr3 (40-222)||(10089139-10089321)
chr3 (40-118)||(10127381-10127459)
chr3 (159-204)||(10032370-10032415)
chr3 (75-204)||(10527725-10527854)
chr3 (75-127)||(10184686-10184738)
chr3 (62-210)||(10889667-10889815)
chr3 (168-211)||(10127288-10127331)
chr3 (75-118)||(10663979-10664022)
chr3 (75-118)||(10672135-10672178)
chr3 (168-222)||(10196022-10196076)
chr3 (168-222)||(10663875-10663929)
chr3 (159-204)||(10261065-10261110)
chr3 (62-135)||(11159577-11159650)
chr3 (168-204)||(10184609-10184645)
chr3 (170-222)||(10363466-10363518)
[»] chr4 (1 HSPs)
chr4 (1-227)||(17852422-17852648)
[»] chr6 (1 HSPs)
chr6 (57-222)||(31679288-31679453)
[»] chr2 (1 HSPs)
chr2 (66-222)||(26907246-26907402)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-139)||(145438-145576)
scaffold0002 (1-139)||(153743-153881)
scaffold0002 (1-139)||(135387-135525)
[»] scaffold0083 (1 HSPs)
scaffold0083 (40-127)||(57958-58045)
[»] chr1 (2 HSPs)
chr1 (165-227)||(826255-826317)
chr1 (75-143)||(826330-826398)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11485608 - 11485382
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11485608 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcctccaagtgcttttgcagcaattggcaatccaccacactt 11485509  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11485508 tctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatct 11485409  T
Q  201 tcatcagatagaggttctaattgatga 227  Q
    |||||||||||||||||||||| ||||    
T  11485408 tcatcagatagaggttctaatttatga 11485382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44957188 - 44957413
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| |||| ||| |||| ||| ||||| ||||||||||||||||| ||    
T  44957188 atatgtcgctattcagaattgaagtccactccttttcaactatctttgaacgcataagtcctcccagtgttttggcagctattggcaatccaccacattt 44957287  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatct 200  Q
    | ||||||||||||||||||||||||||||||||||||| |||||  ||| |   ||||| | | ||||||||||||| |||||||||||||||||||||    
T  44957288 tttagcaatcttcctgccaatctcttctaggtttgggta-ttaccttgaacacggtcttcgctgtcaaatgcatgctttgagagtaaagaccaacaatct 44957386  T
Q  201 tcatcagatagaggttctaattgatga 227  Q
    |||||||||||||||||||||| ||||    
T  44957387 tcatcagatagaggttctaatttatga 44957413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10501144 - 10500918
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    |||||||||||| |||||||| ||||||||| ||||||||  |||||||| ||| ||||| |||||||||||||||||| || |||||||||||||||||    
T  10501144 atatgtcgctattcagaattgcagtccactctttttcaaccgcctttgaacgcaatagtcctccaagtgcttttgcagctatcggcaatccaccacactt 10501045  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatct 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| | | |||||| | ||||||||||||||||||||||||| |||||||||     
T  10501044 tctagcaatcttcctgccaatctcttctagctttgggtatttaccacgaacatagtcttcatcaccaaatgcatgcttcgagagtaaagtccaacaatca 10500945  T
Q  201 tcatcagatagaggttctaattgatga 227  Q
    |||||||||||||||||||||| ||||    
T  10500944 tcatcagatagaggttctaatttatga 10500918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 11781495 - 11781701
Alignment:
Q  15 agaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcc 114  Q
    ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||  || ||||| ||||||||||||||||| ||| ||||||||||||    
T  11781495 agaattgaagtccactccttttcaactacctttgaacgcataagtcctccaagtgtcttggcagctattggcaatccaccacattttttagcaatcttcc 11781594  T
Q  115 tgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagagg 214  Q
    ||||||||||||||||||||||||||||||  |||  | | || | ||  ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  11781595 tgccaatctcttctaggtttgggtatttacggcgatcacagtccttactaccaaatgcatgtttcgagagtaaagaccaacaatcttcatgagatagagg 11781694  T
Q  215 ttctaat 221  Q
    |||||||    
T  11781695 ttctaat 11781701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 10518041 - 10517834
Alignment:
Q  15 agaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcc 114  Q
    ||||||| || ||||||||||||||||||||||||| |||| |||| |||||||| ||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  10518041 agaattgaagaccactccttttcaactacctttgaacgcataagtcctccaagtgttttggcagctattggtaacccaccacattttttagcaatcttcc 10517942  T
Q  115 tgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagagg 214  Q
    ||||||||||||| || |||||||||||||   ||  |   || | ||  ||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  10517941 tgccaatctcttcaagatttgggtatttactgtgatcactgtccttactaccaaatgcatgttttgagagtaaagaccaacaatcttcatgagatagagg 10517842  T
Q  215 ttctaatt 222  Q
    ||||||||    
T  10517841 ttctaatt 10517834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 10433617 - 10433764
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcat 174  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||| || ||||| ||| ||| || | ||    |  |||| || |||| ||| |||||||    
T  10433617 gcagcaattggcaatcctccacactttcttgcaatctccctgcctatttcttcaagggttgtgtttgtattgaggtgaaactcatcactgcccaatgcat 10433716  T
Q  175 gcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||    
T  10433717 gcttcgagagtaaagaccaacaatcttcatttgatagaagttctaatt 10433764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13333474 - 13333336
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    ||||||| ||||  ||||||| ||||||||| ||| || ||||||||||| |||  | || ||| |||| ||| ||||| || |||||||||||||||||    
T  13333474 atatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctatgggcaatccaccacactt 13333375  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    | | |||||||| || ||||| |||||||| ||||||||    
T  13333374 tttggcaatctttctaccaatttcttctagatttgggta 13333336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13344659 - 13344521
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    ||||||| ||||  ||||||| ||||||||| ||| || ||||||||||| |||  | || ||| |||| ||| ||||| || |||||||||||||||||    
T  13344659 atatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctatgggcaatccaccacactt 13344560  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    | | |||||||| || ||||| |||||||| ||||||||    
T  13344559 tttggcaatctttctaccaatttcttctagatttgggta 13344521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 11769727 - 11769583
Alignment:
Q  78 gcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgct 177  Q
    |||||||||||||| ||||||||||| ||||||||||| || || ||||| ||| ||| || | |||   |  |||| || ||||  || ||||||||||    
T  11769727 gcaattggcaatcctccacactttcttgcaatcttccttcctatttcttcaagggttgtgtttgtactatggtgaaactcatcacttcccaatgcatgct 11769628  T
Q  178 tcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    | |||||||||||||||||||||||||  |||||| ||| |||||    
T  11769627 ttgagagtaaagaccaacaatcttcatttgatagaagttttaatt 11769583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13171601 - 13171463
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    ||||||| ||||  ||||||| ||||||||| ||| || ||||||||||| |||  | || ||| |||| ||| | ||| || |||||||||||||||||    
T  13171601 atatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttaggagctatgggcaatccaccacactt 13171502  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    | | |||||||| || ||||| |||||||| ||||||||    
T  13171501 tttggcaatctttctaccaatttcttctagatttgggta 13171463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 10581132 - 10580952
Alignment:
Q  40 ctacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    ||||||||||| | |  |||| ||| |||| ||| ||||| ||||||||||| |||||| |||| ||||||||||||||||| ||||| |||  ||  |     
T  10581132 ctacctttgaagggagaagtcctcctagtgttttagcagctattggcaatcccccacaccttcttgcaatcttcctgccaatttcttcaagggctgtatt 10581033  T
Q  140 tttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaa 220  Q
    | |||   |  |||| || ||||  || |||||||  || |||||||||||||||||||||||||  ||||||||||||||    
T  10581032 tgtactatggtgaaactcatcacttcccaatgcatagtttgagagtaaagaccaacaatcttcatttgatagaggttctaa 10580952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 9839357 - 9839210
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcat 174  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| || ||||| |||  || || |  ||   |  |||| || ||||  || |||||||    
T  9839357 gcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggctgtgtttgaactatggtgaaactcatcacttcccaatgcat 9839258  T
Q  175 gcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    |||| |||||||||||||||||||||||||  |||||| | |||||||    
T  9839257 gctttgagagtaaagaccaacaatcttcatttgatagaagatctaatt 9839210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 9850235 - 9850088
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcat 174  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| || ||||| |||  || || |  ||   |  |||| || ||||  || |||||||    
T  9850235 gcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggctgtgtttgaactatggtgaaactcatcacttcccaatgcat 9850136  T
Q  175 gcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    |||| |||||||||||||||||||||||||  |||||| | |||||||    
T  9850135 gctttgagagtaaagaccaacaatcttcatttgatagaagatctaatt 9850088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 10363336 - 10363423
Alignment:
Q  40 ctacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttc 127  Q
    ||||||||||| | |  |||| ||| |||| ||| ||||||||||||||||| ||||||||||| |||||||||||||| || |||||    
T  10363336 ctacctttgaacggagaagtcctcctagtgttttagcagcaattggcaatcctccacactttcttgcaatcttcctgcctatttcttc 10363423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 10261229 - 10261151
Alignment:
Q  40 ctacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgcc 118  Q
    ||||||||||| | |  |||| |||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  10261229 ctacctttgaacgtagaagtcctccaagtgttttggcagctattggcaatcctccacactttcttgcaatcttcctgcc 10261151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 11148397 - 11148579
Alignment:
Q  45 tttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttac 144  Q
    |||||| ||| || || |||||||| ||||||||| || ||||| ||| |||||||||| |||||||| || |||||  |||||||||||| | |||||     
T  11148397 tttgaacgcaatactcctccaagtgtttttgcagctatgggcaacccaacacactttcttgcaatctttctaccaattgcttctaggtttgagcatttat 11148496  T
Q  145 cccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaattgatga 227  Q
        |  ||| | |||||  |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||| ||||    
T  11148497 tgtcacaaaagttttcacttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatga 11148579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 8861795 - 8861630
Alignment:
Q  62 tccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttca 161  Q
    |||||||| ||||||||| || ||||| ||| |||||||||| |||||||| || |||||  |||||||||||| | |||||     |  ||| | ||||    
T  8861795 tccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctttctaccaattgcttctaggtttgagcatttattgtcacaaaagttttca 8861696  T
Q  162 ccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaattgatga 227  Q
    |  |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||| ||||    
T  8861695 cttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatga 8861630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 10375418 - 10375547
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcat 174  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| || ||||| ||| ||| || |  ||   |  |||| || ||||  || |||||||    
T  10375418 gcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggttgtgtttgaactatggtgaaactcatcactacccaatgcat 10375517  T
Q  175 gcttcgagagtaaagaccaacaatcttcat 204  Q
    |||| ||||||||||||||||| |||||||    
T  10375518 gctttgagagtaaagaccaacagtcttcat 10375547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 11130586 - 11130751
Alignment:
Q  62 tccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttca 161  Q
    |||||||| ||||||||| || ||||| ||| |||||||||| |||||||| || |||||  |||||||||||| | |||||     |  ||| | ||||    
T  11130586 tccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctttctaccaattgcttctaggtttgagcatttattgtcacaaaagttttca 11130685  T
Q  162 ccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaattgatga 227  Q
    |  |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||| ||||    
T  11130686 cttccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatga 11130751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 10032512 - 10032456
Alignment:
Q  62 tccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgcc 118  Q
    |||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  10032512 tccaagtgttttggcagctattggcaatcctccacactttcttgcaatcttcctgcc 10032456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 10077765 - 10077619
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcat 174  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| || ||||| ||| ||| || | |||   |  |||| ||  || | |  |||||||    
T  10077765 gcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggttgagtttgtactatggtgaaactcaccaactctcaatgcat 10077666  T
Q  175 gcttcgagagtaaagaccaacaatcttcatcagatagaggttctaat 221  Q
    |||| || |||||| |||||||||||||||  |||| ||||||||||    
T  10077665 gctttgaaagtaaataccaacaatcttcatttgataaaggttctaat 10077619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 10089321 - 10089139
Alignment:
Q  40 ctacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    ||||||||||| | |  |||| ||| |||| ||| ||||| ||||||||||| |||||||| || |||||||||| ||||||  |||| ||| ||| ||     
T  10089321 ctacctttgaacgtagaagtcctcctagtgttttggcagctattggcaatcctccacacttccttgcaatcttccggccaattgcttcaagggttgtgtt 10089222  T
Q  140 tttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    | |||   |  |||| |  |||  ||| ||||||||||| |||||||||| ||||||||||||||  || ||| |||||||||    
T  10089221 tgtactatggggaaacttatcattgcccaatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatt 10089139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 10127459 - 10127381
Alignment:
Q  40 ctacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgcc 118  Q
    ||||||||||| | |  |||| ||| |||| ||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  10127459 ctacctttgaacgtagaagtcctcctagtgttttagcagctattggcaatcctccacactttcttgcaatcttcctgcc 10127381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 10032415 - 10032370
Alignment:
Q  159 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcat 204  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||    
T  10032415 tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcat 10032370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 10527854 - 10527725
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcat 174  Q
    ||||| ||||||||||| ||| ||||||| |||||||| ||||| || ||||| ||| ||| || | |||      |||| || ||||  || |||||||    
T  10527854 gcagctattggcaatcctccatactttcttgcaatctttctgcctatttcttcaagggttgtgtttgtactattgtgaaactcatcacttcccaatgcat 10527755  T
Q  175 gcttcgagagtaaagaccaacaatcttcat 204  Q
    |||| |||||||||||||||||||||||||    
T  10527754 gctttgagagtaaagaccaacaatcttcat 10527725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 10184738 - 10184686
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttc 127  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||| || |||||    
T  10184738 gcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttc 10184686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 10889815 - 10889667
Alignment:
Q  62 tccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttca 161  Q
    |||||||| ||||||||| || ||||| ||| |||||||||| |||||||  || |||||  |||||||||||| | |||||     |  ||| | ||||    
T  10889815 tccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctgtctaccaattgcttctaggtttgagcatttattgtcacaaaagttttca 10889716  T
Q  162 ccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagata 210  Q
    |  |||||||||||||| ||||||||||||||   |||||||| |||||    
T  10889715 cttccaaatgcatgctttgagagtaaagaccatgtatcttcattagata 10889667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 10127331 - 10127288
Alignment:
Q  168 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatag 211  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  10127331 aatgcatgctttgatagtaaagaccaacaatcttcatctgatag 10127288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 10664022 - 10663979
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgcc 118  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  10664022 gcagctattggcaatcctccacactttcttgcaatcttcctgcc 10663979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 10672178 - 10672135
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgcc 118  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  10672178 gcagctattggcaatcctccacactttcttgcaatcttcctgcc 10672135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 10196076 - 10196022
Alignment:
Q  168 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    ||||||||||| |||||||||| ||||||||||||||  || ||| |||||||||    
T  10196076 aatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatt 10196022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 10663929 - 10663875
Alignment:
Q  168 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    ||||||||||| || ||||| ||||||||||||||||  |||||| |||||||||    
T  10663929 aatgcatgctttgaaagtaaggaccaacaatcttcatttgatagaagttctaatt 10663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 10261110 - 10261065
Alignment:
Q  159 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcat 204  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||    
T  10261110 tcactgcccaatgcatgctttgagagtaaagaccaacagtcttcat 10261065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 11159577 - 11159650
Alignment:
Q  62 tccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttg 135  Q
    |||||||| ||||||||| || ||||| ||| |||||||||| |||||||  || |||||  ||||||||||||    
T  11159577 tccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctgtctaccaattgcttctaggtttg 11159650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 10184645 - 10184609
Alignment:
Q  168 aatgcatgcttcgagagtaaagaccaacaatcttcat 204  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  10184645 aatgcatgctttgagagtaacgaccaacaatcttcat 10184609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 10363466 - 10363518
Alignment:
Q  170 tgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    ||||||||| |||||||||| ||||||||||||||  |||||| | |||||||    
T  10363466 tgcatgctttgagagtaaagtccaacaatcttcatttgatagaagatctaatt 10363518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17852422 - 17852648
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    |||| ||||||| |||||||| ||||||||| |||||| ||||||| ||  |||||||||  || |||||||| ||||| |||||||| ||| |||||||    
T  17852422 atatatcgctattcagaattgcagtccactcattttcatctaccttcgagcgcattagtccaccgagtgctttggcagctattggcaagccatcacactt 17852521  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatct 200  Q
    |||||  ||||||||||||||  ||||||  |||| ||||||||   ||  ||  |||||||| |||||||||||||| ||||| |||||||||||||||    
T  17852522 tctagatatcttcctgccaattgcttctaaatttgagtatttactgtgaccaaggtcttcacctccaaatgcatgctttgagagcaaagaccaacaatct 17852621  T
Q  201 tcatcagatagaggttctaattgatga 227  Q
    ||||| |||| ||||||||||| ||||    
T  17852622 tcatcggatataggttctaatttatga 17852648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 31679288 - 31679453
Alignment:
Q  57 agtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaatt 156  Q
    |||| |||||||| ||| ||||| ||||||||||| | ||||||| | ||||||||||| |||||  |||||||| ||||||||||||  | |  || ||    
T  31679288 agtcctccaagtgttttggcagctattggcaatccgcaacacttttttgcaatcttcctaccaattgcttctaggcttgggtatttacggccacaaagtt 31679387  T
Q  157 cttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    ||||||  |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||    
T  31679388 cttcacttccaaatgcatgctttgagagtaaagaccagcaatcatcatctgatagaggttctaatt 31679453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 26907402 - 26907246
Alignment:
Q  66 agtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtatttaccccgaagaaattcttcaccgc 165  Q
    |||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||| ||   |||   |  |||| |||| ||  |    
T  26907402 agtgttttagcagcaattggcaatcctccacactttcttgcaatcttcctgccaatttcttcgagggttgtgttaatactatggtgaaactctttacttc 26907303  T
Q  166 caaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatt 222  Q
    | ||||||||||| ||||||||||||||||||||||||   ||||||||||||||||    
T  26907302 ccaatgcatgctttgagagtaaagaccaacaatcttcagttgatagaggttctaatt 26907246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 145438 - 145576
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    ||||||| ||||  ||||||| ||||||||| ||| || ||||||||||| |||  | || ||| |||| ||| ||||| || |||||||||||||||||    
T  145438 atatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctatgggcaatccaccacactt 145537  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    | | |||||||| || ||||| |||||||| ||||||||    
T  145538 tttggcaatctttctaccaatttcttctagatttgggta 145576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 153743 - 153881
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    ||||||| ||||  ||||||| ||||||||| ||| || ||||||||||| |||  | || ||| |||| ||| ||||| || |||||||||||||||||    
T  153743 atatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctatgggcaatccaccacactt 153842  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    | | |||||||| || ||||| |||||||| ||||||||    
T  153843 tttggcaatctttctaccaatttcttctagatttgggta 153881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 135387 - 135525
Alignment:
Q  1 atatgtcgctatgcagaattgtagtccactccttttcaactacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactt 100  Q
    ||||||| ||||  ||||||| ||||||||| ||| || ||||||||||| |||  | || ||| |||| ||| | ||| || |||||||||||||||||    
T  135387 atatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttaggagctatgggcaatccaccacactt 135486  T
Q  101 tctagcaatcttcctgccaatctcttctaggtttgggta 139  Q
    | | |||||||| || ||||| |||||||| ||||||||    
T  135487 tttggcaatctttctaccaatttcttctagatttgggta 135525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 57958 - 58045
Alignment:
Q  40 ctacctttgaatgcattagtcttccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttc 127  Q
    ||||||||||| | |  |||| ||| |||| ||| ||||| ||||||||||| |||||| |||| ||||||||||||||||| |||||    
T  57958 ctacctttgaaaggagaagtcctcctagtgttttagcagctattggcaatcccccacaccttcttgcaatcttcctgccaatttcttc 58045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 826317 - 826255
Alignment:
Q  165 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaattgatga 227  Q
    |||||||||| ||| ||||||||||||||||||| ||| || ||||||||||| |||| ||||    
T  826317 ccaaatgcatacttggagagtaaagaccaacaatgttcgtccgatagaggttccaatttatga 826255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 826398 - 826330
Alignment:
Q  75 gcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggtattta 143  Q
    ||||| ||||||||||||||||||||| | ||||||||| | |||||  |||||| | |||||||||||    
T  826398 gcagctattggcaatccaccacacttttttgcaatcttcttcccaattgcttctaaggttgggtattta 826330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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