View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14394_low_23 (Length: 233)
Name: NF14394_low_23
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 51213165 - 51213328
Alignment:
| Q |
17 |
agcaacaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgccta |
116 |
Q |
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| T |
51213165 |
agcaacaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgccta |
51213264 |
T |
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| Q |
117 |
agcacaataaggaacgctgatatcattgctgttattcacgaaggaaaagtagtagaaaaaggta |
180 |
Q |
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| T |
51213265 |
agcacaataaggaacgctgatatcattgctgttattcacgaaggaaaagtagtagaaaaaggta |
51213328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 51157193 - 51157352
Alignment:
| Q |
21 |
acaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgcctaagca |
120 |
Q |
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| T |
51157193 |
acaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggagagaataatgataaaccggacaactatcgttgtagctcaccgcttaagta |
51157292 |
T |
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| Q |
121 |
caataaggaacgctgatatcattgctgttattcacgaaggaaaagtagtagaaaaaggta |
180 |
Q |
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| T |
51157293 |
caataagaaatgttgaaaccattgctgtcattcatcatggaaaaatagttgaaagaggta |
51157352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 51146071 - 51146230
Alignment:
| Q |
21 |
acaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgcctaagca |
120 |
Q |
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| T |
51146071 |
acaagtgcccttgatgcagaatctgagagaattgtacaagaggcattgaacagaataatgataaaccggacgactatcgttgtagcacaccgcttgagca |
51146170 |
T |
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| Q |
121 |
caataaggaacgctgatatcattgctgttattcacgaaggaaaagtagtagaaaaaggta |
180 |
Q |
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| T |
51146171 |
ctataagaaatgttgatacaattgctgtcattcatcaaggaaaaatagttgaaagaggta |
51146230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 29936979 - 29936847
Alignment:
| Q |
21 |
acaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgcctaagca |
120 |
Q |
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| T |
29936979 |
acaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagta |
29936880 |
T |
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| Q |
121 |
caataaggaacgctgatatcattgctgttattc |
153 |
Q |
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| T |
29936879 |
caatcagaaatgttgataccattgctgtcattc |
29936847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 51200007 - 51200150
Alignment:
| Q |
21 |
acaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgcctaagca |
120 |
Q |
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|||||||| |||||||| |||||||| ||| | ||||||||| | |||| ||| | ||| ||||||||||||| | |||||||||||||| | || | |
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| T |
51200007 |
acaagtgcgcttgatgctgaatctgagagaattgtacaagaggcattggatagagtaatggtaaaccgaacaactgtgattgtagctcaccgtttgagta |
51200106 |
T |
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| Q |
121 |
caataaggaacgctgatatcattgctgttattcacgaaggaaaa |
164 |
Q |
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| T |
51200107 |
caataaagaatgctgataccattgccgttattcatcaaggaaaa |
51200150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 49736882 - 49736719
Alignment:
| Q |
17 |
agcaacaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcattgtagctcaccgccta |
116 |
Q |
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|
|||||||||||||||||| ||||| || |||||||| ||||||||||| || || |||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
49736882 |
agcaacaagtgcccttgacgcagagtcggaaagagtggtacaagagacgctagaaagaattatgataaaccgaacaatgatcattgtagcccaccgccta |
49736783 |
T |
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| Q |
117 |
agcacaataaggaacgctgatatcattgctgttattcacgaaggaaaagtagtagaaaaaggta |
180 |
Q |
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|||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
49736782 |
agcacaataaggaatgctgatatcattgccgttattcaccaaggaaaagtagtagaaaaaggta |
49736719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 38566440 - 38566397
Alignment:
| Q |
21 |
acaagtgcccttgatgcagaatctgaaagagtagtacaagagac |
64 |
Q |
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|||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
38566440 |
acaagtgcacttgatgcaaaatctgaaagggtagtacaagagac |
38566397 |
T |
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