View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14394_low_4 (Length: 364)
Name: NF14394_low_4
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 17870249 - 17870610
Alignment:
| Q |
1 |
gaagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctc |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||| || |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17870249 |
gaagcaacacctttggattcttcaacatggctctagctattgctatcctttgtttttgcccccctgaaagttgcactcctttgtccccacaccatgtctc |
17870348 |
T |
|
| Q |
101 |
atacccatctttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtcacatgtt---gttcca |
197 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17870349 |
atacccatctttcaaacttgcaatgaaatcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtcacatgttgttgttcca |
17870448 |
T |
|
| Q |
198 |
tatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17870449 |
tatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgattttatgt |
17870548 |
T |
|
| Q |
298 |
ttgtaccatctattgtcacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17870549 |
ttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatg |
17870610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 2592431 - 2592074
Alignment:
| Q |
2 |
aagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctca |
101 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| || |||||| || ||| | || |||||| ||| ||| |
|
|
| T |
2592431 |
aagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctatcaccacacagtgtatca |
2592332 |
T |
|
| Q |
102 |
tacccatctttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtca-catgttgttccatat |
200 |
Q |
| |
|
|| |||||||| || || | ||||| ||||||||||| || | ||||||||||||| || ||| ||||||| | || ||| ||| | | ||||||| |
|
|
| T |
2592331 |
taaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactttcatcaaccttatcatcatat-gatccatat |
2592233 |
T |
|
| Q |
201 |
gcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttg |
300 |
Q |
| |
|
||||| || ||| | ||||| ||| | | ||||||||||||||| ||||||||||| |||||||| ||||||||| |||| |||||| |||||||| |
|
|
| T |
2592232 |
gcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagattataaatttttatgtccc |
2592133 |
T |
|
| Q |
301 |
taccatctattgtcacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
||||||| |||||||| | ||||| | ||| |||||||| ||||| |||| ||||||| |
|
|
| T |
2592132 |
taccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatg |
2592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 2451207 - 2450853
Alignment:
| Q |
2 |
aagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctca |
101 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || |||||||| || ||| | || |||||| |||||||| |
|
|
| T |
2451207 |
aagcaacacctttggattcttcaatatagctctagctattgcaatcctttgcttttgaccaccagaaagttgaactcctctatcaccacacaatgtctca |
2451108 |
T |
|
| Q |
102 |
tacccatctttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtcacatgttgttccatatg |
201 |
Q |
| |
|
|| |||| ||| || || | || || ||||||||||| || | | | ||| ||||| |||||| | ||||| | || ||| | || |||||||| |
|
|
| T |
2451107 |
taaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcata---tgctccatatg |
2451011 |
T |
|
| Q |
202 |
caatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttgt |
301 |
Q |
| |
|
|||| || || |||||||| ||| | ||||||||| ||||| |||||||||| || || || |||| |||| |||| |||||||| ||||| | | |
|
|
| T |
2451010 |
caatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagactttatatcact |
2450911 |
T |
|
| Q |
302 |
accatctattgtcacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
|||||| || ||||| | ||||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
2450910 |
accatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
2450853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 2623963 - 2623618
Alignment:
| Q |
14 |
tggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctcatacccatctttc |
113 |
Q |
| |
|
||||||||| | ||||| ||||||||||| || ||||| |||||||| || |||||| || ||| |||| |||||| |||| ||||| |||||||| |
|
|
| T |
2623963 |
tggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctgtcaccacacaatgtgtcatatccatctttt |
2623864 |
T |
|
| Q |
114 |
aaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtcacatgttgttccatatgcaatgttgtctc |
213 |
Q |
| |
|
|| || | ||||| ||||||||||| || | ||||||||||||| || ||| | ||||| | | |||| || |||||||||||| || ||| |
|
|
| T |
2623863 |
aagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactctcatcaacctgatcaccatatgatccatatgcaatattttctt |
2623764 |
T |
|
| Q |
214 |
ttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttgtaccatctattgt |
313 |
Q |
| |
|
||||||| ||| | ||||||||||||||| ||||||||||| |||||||| |||| |||| |||| ||||||| |||||||| | | ||||| ||||| |
|
|
| T |
2623763 |
ttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattataagtttttatgtctctgccatcaattgt |
2623664 |
T |
|
| Q |
314 |
cacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
||| | |||| | ||| |||||||| ||||| |||| ||||||| |
|
|
| T |
2623663 |
cactatcccttcaagtggatcatagaacctctcaattagtcctatg |
2623618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 2440485 - 2440128
Alignment:
| Q |
2 |
aagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctca |
101 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| || |||||| || ||| | || |||||| ||| ||| |
|
|
| T |
2440485 |
aagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctatcaccacacagtgtatca |
2440386 |
T |
|
| Q |
102 |
tacccatctttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtca-catgttgttccatat |
200 |
Q |
| |
|
|| |||||||| || || | ||||| || |||||||| || | ||||||||||||| |||||| | ||||| | || ||| ||| | | ||||||| |
|
|
| T |
2440385 |
taaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatat-gctccatat |
2440287 |
T |
|
| Q |
201 |
gcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttg |
300 |
Q |
| |
|
|||| || ||||||||||| ||| | ||||||||||||||| ||||||||||| || ||||| |||| ||| ||| ||||||| |||||||| | |
|
|
| T |
2440286 |
acaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattataagtttttatgtctc |
2440187 |
T |
|
| Q |
301 |
taccatctattgtcacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
||||||| | |||||| | ||||| | ||| |||||||||||||| |||| ||||||| |
|
|
| T |
2440186 |
taccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
2440128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 2641062 - 2641411
Alignment:
| Q |
10 |
cctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctcatacccatc |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||| |||||||| || |||||| || ||| | || |||||| |||| ||||| ||||| |
|
|
| T |
2641062 |
cctttggattcttcaatatagctctagctattgcaatcctttgtttttgaccaccactaagttgaactcctctatcaccacacaatgtatcataaccatc |
2641161 |
T |
|
| Q |
110 |
tttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtca-catgttgttccatatgcaatgtt |
208 |
Q |
| |
|
|| || || | ||||| ||||||||||| || | ||||||||| || |||||| | ||||| | || ||| ||| | ||| |||||||| || |
|
|
| T |
2641162 |
ttgtaagcttgatatgaaatcatgagcatttgcagcctttgatgcctgaataatctcactctcatcaactttatcatcatag-gctccgtatgcaatatt |
2641260 |
T |
|
| Q |
209 |
gtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttgtaccatct |
308 |
Q |
| |
|
|| |||||||| ||| | || |||||||||||| || |||||||| |||||||| |||| ||| |||| |||||||| ||||| | | |||||| |
|
|
| T |
2641261 |
ttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagattataagactttatatcttcaccatca |
2641360 |
T |
|
| Q |
309 |
attgtcacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
|||||||| | ||||| ||||| |||||||||||||| |||| ||||||| |
|
|
| T |
2641361 |
attgtcactatccctttaattggatcatagaatctctcaattagtcctatg |
2641411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 359
Target Start/End: Original strand, 2672214 - 2672571
Alignment:
| Q |
2 |
aagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctca |
101 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| || |||||| || ||| |||| |||||| | || ||| |
|
|
| T |
2672214 |
aagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctgtcaccacacaaagtatca |
2672313 |
T |
|
| Q |
102 |
tacccatctttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtca-catgttgttccatat |
200 |
Q |
| |
|
|| |||||||| || || | || || ||||||||||| | | ||||||||||||| |||||| | ||||| | | ||| ||| | ||||||| |
|
|
| T |
2672314 |
taaccatcttttaagcttgatataaaatcatgagcatttgaagcctttgatgcctctataatctcactctcatcaaccgtatcatcataa-gctccatat |
2672412 |
T |
|
| Q |
201 |
gcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttg |
300 |
Q |
| |
|
||||| || || |||||||| ||| | | ||||||||||||||| |||||||| || |||||||| || | |||| | || ||||| | ||||||| | |
|
|
| T |
2672413 |
gcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgtctttatgtctc |
2672512 |
T |
|
| Q |
301 |
taccatctattgtcacacttccttttattgggtcatagaatctctctattaatcctatg |
359 |
Q |
| |
|
|||| || |||||||| | ||||| | |||||||||||||||||| |||| ||||||| |
|
|
| T |
2672513 |
taccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
2672571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 343
Target Start/End: Original strand, 2569031 - 2569180
Alignment:
| Q |
194 |
tccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagatttt |
293 |
Q |
| |
|
|||||||||||| || || |||||||| ||| | | ||||||||||||||| ||||||||||| ||||||| |||| |||| |||| ||||| | ||| |
|
|
| T |
2569031 |
tccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgtcttt |
2569130 |
T |
|
| Q |
294 |
atgtttgtaccatctattgtcacacttccttttattgggtcatagaatct |
343 |
Q |
| |
|
|||| | ||||||| |||||||| | ||||| | ||| ||||||||||| |
|
|
| T |
2569131 |
atgtctctaccatcaattgtcactatccctttaagtggatcatagaatct |
2569180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 358
Target Start/End: Original strand, 2596398 - 2596754
Alignment:
| Q |
2 |
aagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctca |
101 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| || |||||| || ||| | || |||||| ||| ||| |
|
|
| T |
2596398 |
aagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctatcaccacacagtgtatca |
2596497 |
T |
|
| Q |
102 |
tacccatctttcaaactagcaatgaagtcatgagcattggctactcttgatgcctctatgatctcagtttcatcgatgttgtca-catgttgttccatat |
200 |
Q |
| |
|
|| |||||||| || || | ||||| || |||||||| || | ||||||||||||| |||||| | ||||| | || ||| ||| | | ||||||| |
|
|
| T |
2596498 |
taaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatat-gctccatat |
2596596 |
T |
|
| Q |
201 |
gcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttataagattttatgtttg |
300 |
Q |
| |
|
|||| || ||| ||||||| ||| | ||||||||||||||| ||||||||||| || ||||| |||| ||| ||| ||||| | ||||||| | |
|
|
| T |
2596597 |
acaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattatatgtctttatgtctc |
2596696 |
T |
|
| Q |
301 |
taccatctattgtcacacttccttttattgggtcatagaatctctctattaatcctat |
358 |
Q |
| |
|
|||| || |||||||| | ||||| | ||| |||||||||||||| |||| |||||| |
|
|
| T |
2596697 |
taccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctat |
2596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 2568839 - 2568949
Alignment:
| Q |
2 |
aagcaacccctttggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctca |
101 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| || |||||| || ||| | || |||||| |||| ||| |
|
|
| T |
2568839 |
aagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctatcaccacacaatgtatca |
2568938 |
T |
|
| Q |
102 |
tacccatcttt |
112 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2568939 |
taaccatcttt |
2568949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 39157765 - 39157673
Alignment:
| Q |
14 |
tggattcttcatcatagccctagctattgctatcctttgcttttgaccccctgaaagttgcacccctttgtccccacaccatgtctcataccc |
106 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||||||| || || ||||| || ||||| ||| | || ||||| |||| |||||||| |
|
|
| T |
39157765 |
tggattcttcaacattgctctagctattgctatcctttgcttctgtcctcctgatagctgcactcctctttctccacagtatgtatcataccc |
39157673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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