View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14394_low_7 (Length: 336)
Name: NF14394_low_7
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14394_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29473049 - 29473286
Alignment:
| Q |
1 |
acatacaccagcaatttccctggtatgaaattcctgatcaggacttttagtcagttcaggaatatctaaaaccctttcaagagttggagccatataagtg |
100 |
Q |
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| T |
29473049 |
acatacaccagcaatttccctggtatgaaattcctgatcaggacttttagtcagttcaggaatatctaaaaccctttcaagagttggagccatataagtg |
29473148 |
T |
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| Q |
101 |
cttattgcatctaatgaagcaccattgactgttcttccaccaaattttttgtgtttaaataaacatccatatagtgagaatgatgatgcaagctgaaagt |
200 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29473149 |
cttactgcctctaatgaagcaccattgactgttcttccaccaaattttttgtgtttaaataaacatccatatagtgagaatgatgatgcaagctgaaagt |
29473248 |
T |
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| Q |
201 |
aaaattgagagcatatgtcacttaaataatatacgaac |
238 |
Q |
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| T |
29473249 |
aaaattgagagcatatgtcacttaaataatataggaac |
29473286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 29465527 - 29465758
Alignment:
| Q |
2 |
catacaccagcaatttccctggtatgaaattcctgatcaggacttttagtcagttcaggaatatctaaaaccctttcaagagttggagccatataagtgc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
29465527 |
catacaccagcaatttccctggtatgaaattcctgattaggacacttaggaagtagaggaatatctaaaaccccttcaagagatggagccatataagtgc |
29465626 |
T |
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| Q |
102 |
ttattgcatctaatgaagcaccattgactgttcttccaccaaattttttgtgtttaaataaacatccatatagtgagaatgatgatgcaagctgaaagta |
201 |
Q |
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| T |
29465627 |
tttctgcatctatagaagcaccgtttactgttcttgccccaaattcattgtgttttaataaacatccatatattgagaaagatgatccaagctgaaagta |
29465726 |
T |
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| Q |
202 |
aaattgagagcatatgtcacttaaataatata |
233 |
Q |
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| T |
29465727 |
aaattgagggcacaagtcacttaaataatata |
29465758 |
T |
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