View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14394_low_9 (Length: 326)

Name: NF14394_low_9
Description: NF14394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14394_low_9
NF14394_low_9
[»] chr5 (12 HSPs)
chr5 (1-309)||(39675889-39676197)
chr5 (178-309)||(10866502-10866633)
chr5 (178-309)||(10873672-10873803)
chr5 (178-309)||(10878743-10878874)
chr5 (178-309)||(10883814-10883945)
chr5 (2-111)||(10866317-10866426)
chr5 (2-111)||(10873879-10873988)
chr5 (2-111)||(10878950-10879059)
chr5 (2-111)||(10884021-10884130)
chr5 (178-309)||(10887732-10887863)
chr5 (3-117)||(10887942-10888056)
chr5 (32-94)||(10045913-10045975)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39675889 - 39676197
Alignment:
Q  1 tgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39675889 tgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatccttcattacgat 39675988  T
Q  101 gaagaagaagatgaagttgctgacattgctgcgaaaaccaccaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagttttgtcgatggaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39675989 gaagaagaagatgaagttgctgacattgctgcgaaaaccaccaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagttttgtccatggaag 39676088  T
Q  201 atgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgattaggaacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676089 atgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgattaggaacca 39676188  T
Q  301 agctgtgga 309  Q
    |||||||||    
T  39676189 agctgtgga 39676197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 10866502 - 10866633
Alignment:
Q  178 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 277  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10866502 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10866601  T
Q  278 cgtgctgctgtgattaggaaccaagctgtgga 309  Q
    ||||| ||    |||||||||||||| |||||    
T  10866602 cgtgcagcaaatattaggaaccaagcggtgga 10866633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 10873803 - 10873672
Alignment:
Q  178 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 277  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10873803 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10873704  T
Q  278 cgtgctgctgtgattaggaaccaagctgtgga 309  Q
    ||||| ||    |||||||||||||| |||||    
T  10873703 cgtgcagcaaatattaggaaccaagccgtgga 10873672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 10878874 - 10878743
Alignment:
Q  178 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 277  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10878874 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10878775  T
Q  278 cgtgctgctgtgattaggaaccaagctgtgga 309  Q
    ||||| ||    |||||||||||||| |||||    
T  10878774 cgtgcagcaaatattaggaaccaagccgtgga 10878743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 10883945 - 10883814
Alignment:
Q  178 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 277  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10883945 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10883846  T
Q  278 cgtgctgctgtgattaggaaccaagctgtgga 309  Q
    ||||| ||    |||||||||||||| |||||    
T  10883845 cgtgcagcaaatattaggaaccaagccgtgga 10883814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 10866317 - 10866426
Alignment:
Q  2 gtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatg 101  Q
    |||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||    
T  10866317 gtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatg 10866416  T
Q  102 aagaagaaga 111  Q
    ||||||||||    
T  10866417 aagaagaaga 10866426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 10873988 - 10873879
Alignment:
Q  2 gtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatg 101  Q
    |||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||    
T  10873988 gtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatg 10873889  T
Q  102 aagaagaaga 111  Q
    ||||||||||    
T  10873888 aagaagaaga 10873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 10879059 - 10878950
Alignment:
Q  2 gtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatg 101  Q
    |||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||    
T  10879059 gtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatg 10878960  T
Q  102 aagaagaaga 111  Q
    ||||||||||    
T  10878959 aagaagaaga 10878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 10884130 - 10884021
Alignment:
Q  2 gtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatg 101  Q
    |||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||    
T  10884130 gtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatg 10884031  T
Q  102 aagaagaaga 111  Q
    ||||||||||    
T  10884030 aagaagaaga 10884021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 10887863 - 10887732
Alignment:
Q  178 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 277  Q
    |||||||||| |||| |||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| |||||||| |||||||||||     
T  10887863 ccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgt 10887764  T
Q  278 cgtgctgctgtgattaggaaccaagctgtgga 309  Q
    ||||| ||   ||||||||||||||| |||||    
T  10887763 cgtgcagcaaagattaggaaccaagcagtgga 10887732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 10888056 - 10887942
Alignment:
Q  3 tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatga 102  Q
    |||||||| |||| |||||| ||||| ||||||||||||| |||| | |  |||||||||  ||||||||||||  |||||||||| |||||||||||||    
T  10888056 tcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatga 10887957  T
Q  103 agaagaagatgaagt 117  Q
     || ||||| |||||    
T  10887956 tgatgaagacgaagt 10887942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 10045913 - 10045975
Alignment:
Q  32 gtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcat 94  Q
    ||||||||||| |||| | |||| ||||||| ||||||||||||| ||| |||||| ||||||    
T  10045913 gtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcattcttcat 10045975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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