View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_13 (Length: 469)
Name: NF14395_high_13
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 41986146 - 41985821
Alignment:
| Q |
16 |
aaagtggacccggattctctactgtcaagaaatccggcagtattcagagcactggaggctgtttgattgaaatagaacggttcagattaaaagctgagca |
115 |
Q |
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| T |
41986146 |
aaagtggacccggattctctactgtcaagaaatccggcagtattcagagcactggaggctgtttgattgaaatagaacggttcagattaaaagctgagca |
41986047 |
T |
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| Q |
116 |
aataaatgaaaaacattgtataccattaattaaaatcggatgactgagatcttcatgcaatcaatattagactgcagagaattcatatctatcaaaagca |
215 |
Q |
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| T |
41986046 |
aataaatcaaaaacattgcataccattaattaaaattggatgactgagatcttcatgcaatcaatattagactgcagagaattcatttctatcaaaagca |
41985947 |
T |
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| Q |
216 |
ggattcccccactacagggaatgccgatcccttgaatatgctatgtttgcaactatacacattatatgtgcaaatcttaacaaagtctatcttaatatcc |
315 |
Q |
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| T |
41985946 |
ggattcccccactacagggaatgccgatcccttgaatatgctatgtttgcaactatacacattatatgtgcaaatcttaacaaagtctatcttaatatcc |
41985847 |
T |
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| Q |
316 |
tctttcagtgaaaactcaagcataaa |
341 |
Q |
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| T |
41985846 |
tctttcagtgaaaactcaagcataaa |
41985821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 41985788 - 41985743
Alignment:
| Q |
415 |
acaatatgcaagggaaataatttgaagtgagttggctatacctttg |
460 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985788 |
acaacatgcaagggaaataatttgaagtgagttggctatacctttg |
41985743 |
T |
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