View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_14 (Length: 467)
Name: NF14395_high_14
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 47377315 - 47377761
Alignment:
| Q |
17 |
agatacattgttcaaattcaaaccctgactagtaaatttgaaaacaaa-ttgagcatatgagtaggactcggatttcacatagatacaactatggcattt |
115 |
Q |
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| T |
47377315 |
agatacattgttcaaattcaaaccctgactagtaaatttgaaaacaaaattaagcatatgagtaggactccgatttcacgttgatacaactatggcattt |
47377414 |
T |
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| Q |
116 |
gatgttatcactacacaaataggaaactaccagcatacag-----aactcatgagagcacacaatattattcaaaatagaacagagtaaaatcacttgtt |
210 |
Q |
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| T |
47377415 |
gatgtaatgacaacacaaataggaaactaccagcatacagaacagaactcatgagagcgcacaatattattcaaaatagaacagagtaaaatcacttgtt |
47377514 |
T |
|
| Q |
211 |
taagcctaattccttatcaattgcaattttaccagtttcaagatcctcatcaaaaaacatatcccaatgaccatcccatttgatgaaaaactcagtatcc |
310 |
Q |
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| T |
47377515 |
taagcctaattccttatcaattgcaattttaccagtttcaagatcctcatcaaaaaacatatcccaatgactatcccatttgatgaaaaactcagtatcc |
47377614 |
T |
|
| Q |
311 |
tcatgatatttcactctgtgcacatcaccagcaggtgtaaacaagtaatccccaaccgttagatcatatctctcttcttttgtcagattccaaacactct |
410 |
Q |
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| T |
47377615 |
tcatgatatttcactctgtgcacgtcaccagcaggtgtaaacaagtaatccccaaccgttagatcatatctctcttcttttgtcagattccaaacactct |
47377714 |
T |
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| Q |
411 |
tcttcccttcaatcaccactaaatcatgtccaaaggtatgatgatgt |
457 |
Q |
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| T |
47377715 |
tcttcccttcaatcaccactaaatcatgtccaaaggtatgatgatgt |
47377761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 47372055 - 47372154
Alignment:
| Q |
198 |
aaaatcacttgtttaagcctaattccttatcaattgcaattttaccagtttcaa---gatcctcatcaaaaaacatatcccaatgaccatcccatttgat |
294 |
Q |
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||||||| ||| ||||||| |||||||||||||||||| ||| ||| |||| ||||||||||||||| ||||||| ||| ||||||||| ||||| |
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| T |
47372055 |
aaaatcatttggctaagcctgattccttatcaattgcaagtttggcagagtcaacaagatcctcatcaaaaaccatatccaaattaccatcccacttgat |
47372154 |
T |
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