View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_20 (Length: 403)
Name: NF14395_high_20
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 43713560 - 43713285
Alignment:
| Q |
16 |
catttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaagctgaggttcccattgatttcaa |
115 |
Q |
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| T |
43713560 |
catttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaag------------------tcaa |
43713479 |
T |
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| Q |
116 |
atgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacatcctcgtggtactaccaaggc |
215 |
Q |
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| T |
43713478 |
atgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacatcctcgtggtactaccaaggc |
43713379 |
T |
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| Q |
216 |
cagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatatt |
309 |
Q |
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| T |
43713378 |
cagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatatt |
43713285 |
T |
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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 7290413 - 7290496
Alignment:
| Q |
306 |
tattttgatttatagggagtgacaaaccaaaaagttcattatatatagacataacaaatcacaatagaaaaatacggccctttg |
389 |
Q |
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| T |
7290413 |
tattttgatttatagggagtgacaaaccaaaaagttcattatatatagacataacaaatcacaatagaaaaatatggccctttg |
7290496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 52894252 - 52894351
Alignment:
| Q |
51 |
gtctaagagtttgcagtgttgaaatgcctgcgagtttaggaagctgaggttcccattgatttcaaatgatgttggattcaggaaactgtggagtttagcg |
150 |
Q |
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| T |
52894252 |
gtctaagagtttgcagttttgaaatgcctgcgagtttagtatgccgaggttcccattgatttcagaggatgttggattcaggaaactgtggagtttagcg |
52894351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 42572532 - 42572489
Alignment:
| Q |
257 |
ttcaatgtcatgatgcctgatcggaaattaattgaaaattaaac |
300 |
Q |
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| T |
42572532 |
ttcaatgtcatgatacctgatcagaaattaattgaaaattaaac |
42572489 |
T |
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