View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_23 (Length: 377)
Name: NF14395_high_23
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 3933605 - 3933944
Alignment:
| Q |
18 |
tgagcaatacgaacatgtcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaaccttcgagttgaaattggaaa-tatt |
116 |
Q |
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| T |
3933605 |
tgagcaatacgaacatgtcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaaccttcgagttgaaattgaaaaatatt |
3933704 |
T |
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| Q |
117 |
aattaatagaatattgaaaatctcttagagaagttatatcttggtaatttggctgcttaaccaacattagcctctgatgaataacatgaagtttgggatg |
216 |
Q |
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| T |
3933705 |
aattaatagaatattgaaaatctcttatagaagttatatcttggtaatttggctgcttaactaactttagcctctgatgaataacatgaagtttgggatg |
3933804 |
T |
|
| Q |
217 |
gacgatattagaggatcctaaaagaagtctcgagaaatcagaaatccatgtcccagaatgatgacgaacaagaccatcgaacccgaacacctcagttctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||| |
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| T |
3933805 |
gacgatattagaggatcctaaaagaagtctcgagaaatcagaaatccatgtcccagaatgatgacgaagaagaccatcgaacccgaaaatctcacttctc |
3933904 |
T |
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| Q |
317 |
catatttgaaatgcgtgtgctctaactattagggtacttg |
356 |
Q |
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| T |
3933905 |
cacatttaaaatgcgtgtgttctaactattagggtacttg |
3933944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 34117074 - 34117134
Alignment:
| Q |
35 |
tcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaacctt |
95 |
Q |
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| T |
34117074 |
tcaatcttggtgaagaagatctttgatgtctttgatcaaagtagcatatttgtgaaacctt |
34117134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 34144093 - 34144153
Alignment:
| Q |
35 |
tcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaacctt |
95 |
Q |
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|||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
34144093 |
tcaatcttggtgaagaagatctttgatgtctttgatcaaagtagcatatttgtgaaacctt |
34144153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 34156709 - 34156769
Alignment:
| Q |
35 |
tcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaacctt |
95 |
Q |
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|||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
34156709 |
tcaatcttggtgaagaagatctttgatgtctttgatcaaagtagcatatttgtgaaacctt |
34156769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 33256690 - 33256621
Alignment:
| Q |
27 |
cgaacatgtcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaaccttc |
96 |
Q |
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| T |
33256690 |
cgaacatgtcaatcttgatgaagaatgtctttgatgtcttggatcaaagtgaaatagttgtgaaaccttc |
33256621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 41479527 - 41479616
Alignment:
| Q |
18 |
tgagcaatacgaacatgtcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaaccttcgagttgaaatt |
107 |
Q |
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|||||||| |||||||| ||| ||| ||||| || |||||||||||| || || | |||| ||||||||||||||||| |||||| |||| |
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| T |
41479527 |
tgagcaatgcgaacatgccaaccttgatgaataagatctttgatgtcgtgaattaaagtaacatatttgtgaaaccttagagttggaatt |
41479616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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