View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_24 (Length: 375)
Name: NF14395_high_24
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_24 |
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| [»] scaffold0128 (4 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 198 - 364
Target Start/End: Original strand, 9174 - 9340
Alignment:
| Q |
198 |
gatgttgaatctagttgttaataatacatgaaacccttgagtcacttttggtatacatacttgcattattgaatctcagtaaaagctaatttcttcgact |
297 |
Q |
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| T |
9174 |
gatgttgaatctagttgttaataatacatgaaacccttgactcacttttggtatacatacttgcattattgtatctcagtagaagctaatttcttcgact |
9273 |
T |
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| Q |
298 |
tttttcacaaagggatatgactgcactttgagaataagaccttcacttttcatgtgtctttgttctt |
364 |
Q |
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| T |
9274 |
tttttcacaaatggatatgactgcactttgagaataagaccttcacttttcatgtgtctttgttctt |
9340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 114 - 364
Target Start/End: Original strand, 26801 - 27049
Alignment:
| Q |
114 |
tattcttggtaaatttacaccaattcaattacactatttttggaagggaaaattgtttatttctatagatgataatgatatatcgatgttgaatctagtt |
213 |
Q |
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| T |
26801 |
tattcttggtaaatttacaccaattcagttacactattttag-aagggagaattgtttagttctatagatgataatgatatatcgatgttgaatctagtt |
26899 |
T |
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| Q |
214 |
gttaataatacatgaaacccttgagtcacttttggtatacatacttgcattattgaatctcagtaaaagctaatttcttcgacttttttcacaaagggat |
313 |
Q |
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| T |
26900 |
gttagta--acatgaaaagcttgagtcacttttg--ctacataattgcattattctatctcagtagaagctaatttcttcgacttttttcacaaagggat |
26995 |
T |
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| Q |
314 |
atgac---tgcactttgagaataagaccttcacttttcatgtgtctttgttctt |
364 |
Q |
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| T |
26996 |
gtgactagtgcactttgcgaataaggccttcacttttcatgtgtctttgttctt |
27049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 9026 - 9174
Alignment:
| Q |
20 |
aaatttatgttaactcatgaacttggtttcaattgtgtgattatctatgtatattgttagcatataatgttttttcaaatcgatacatattgagtattct |
119 |
Q |
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| T |
9026 |
aaatttatgttaactcatgaacttggtttcaattgtgtgattatctatgtatattgttagcatataatgttttttcaaatcgatacatattgagtattct |
9125 |
T |
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| Q |
120 |
tggtaaatttacaccaattcaattacactatttttggaagggaaaattg |
168 |
Q |
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| T |
9126 |
tggtaaatttacaccaattaaattacactatttttggaagggaaaattg |
9174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 26145 - 26209
Alignment:
| Q |
46 |
tttcaattgtgtgattatctatgtatattgttagcatat-aatgttttttcaaatcgatacatat |
109 |
Q |
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| T |
26145 |
tttcaattgtgtaattatctatgtatattttaagcatataaattttttttcaaatcaataaatat |
26209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 22472648 - 22472537
Alignment:
| Q |
55 |
tgtgattatctatgtatattgttagcatataatgttttttcaaatcgatacatattgagtattcttggtaaatttacaccaattcaattacactattttt |
154 |
Q |
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| T |
22472648 |
tgtgattatctatgtatatttttagcatataatgttttttcaaatcgatacatattgaatattcttggtaaattttcaccaattcaattacacta-tttt |
22472550 |
T |
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| Q |
155 |
ggaagggaaaatt |
167 |
Q |
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| T |
22472549 |
ggaagggagaatt |
22472537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 22472521 - 22472454
Alignment:
| Q |
224 |
catgaaacccttgagtcacttttggtatacatacttgcattattgaatctcagtaaaagctaatttcttc |
293 |
Q |
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| T |
22472521 |
catgaaaccgttgagtcacttttgcta--catacttgcattattatatctcagtagaagctaatttcttc |
22472454 |
T |
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