View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_27 (Length: 361)
Name: NF14395_high_27
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 11319173 - 11319525
Alignment:
| Q |
1 |
aaggatgcctagaacttctttgtctctctagtctcataattatgcaacaacattttttctttgaatacagctcttttcatccatcagaactcagtgtgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11319173 |
aaggatgcctagaacttctttgtctctctagtctcataattatgcaacaacattttttctttcaatacagctcttttcatccatcagaactcagtgtgca |
11319272 |
T |
|
| Q |
101 |
ataacatgaaattacaaaattcagaaaaaatatgatctaaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcag |
200 |
Q |
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|||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11319273 |
ataacatgaaattataaaattcagaaaaaacatgatctgaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcag |
11319372 |
T |
|
| Q |
201 |
ctgcaactaagaaacatcaaaatgaagaaaactatagaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaataaaccaatataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11319373 |
ctgcaactaagaaacatcaaaatgaagaaaactatagaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaat-aaccaatataa |
11319471 |
T |
|
| Q |
301 |
ttaatttaattttcttcacaccatatagaacactcttgatggttagtataatct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11319472 |
ttaatttaattttcttcacaccatatagaacactcttgatggttagtataatct |
11319525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 11477194 - 11477546
Alignment:
| Q |
1 |
aaggatgcctagaacttctttgtctctctagtctcataattatgcaacaacattttttctttgaatacagctcttttcatccatcagaactcagtgtgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11477194 |
aaggatgcctagaacttctttgtctctctagtctcataattatgcaacaacattttttctttcaatacagctcttttcatccatcagaactcagtgtgca |
11477293 |
T |
|
| Q |
101 |
ataacatgaaattacaaaattcagaaaaaatatgatctaaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcag |
200 |
Q |
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|
|||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11477294 |
ataacatgaaattataaaattcagaaaaaacatgatctgaggaacacaggaaacgccgaatcagagttctattttcccatgaacaaagcatacatttcag |
11477393 |
T |
|
| Q |
201 |
ctgcaactaagaaacatcaaaatgaagaaaactatagaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaataaaccaatataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11477394 |
ctgcaactaagaaacatcaaaatgaagaaaactatagaagaaacgttaaagcgttttatgagcatataattaagcctttcttgccaat-aaccaatataa |
11477492 |
T |
|
| Q |
301 |
ttaatttaattttcttcacaccatatagaacactcttgatggttagtataatct |
354 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11477493 |
ttaatttaattttcttcacaccatatagaacactcttgatggttagtataatct |
11477546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 56401989 - 56401904
Alignment:
| Q |
160 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
244 |
Q |
| |
|
|||| |||||| ||||||| | |||||||||||| ||||||||||||||||||| |||||||||| ||||| |||| ||||||| |
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| T |
56401989 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaatgatgaaaattataaaagaaac |
56401904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 18905203 - 18905260
Alignment:
| Q |
182 |
aacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaa |
239 |
Q |
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||||||||||| | || |||||||||||||||| ||||||||| ||| || ||||||| |
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|
| T |
18905203 |
aacaaagcataaaatttagctgcaactaagaaatatcaaaatggagagaattatagaa |
18905260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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