View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_3 (Length: 606)
Name: NF14395_high_3
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 32971425 - 32972014
Alignment:
| Q |
1 |
cgattctatgcaatctcatgtgattgatgatcatgtatttagtgcaaacatgctaaaaaa-gagattggagggatcaatattgtaggttgtaatgacaaa |
99 |
Q |
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| T |
32971425 |
cgattccatgcaatctcatgtgattgaagatcatgtatttagtgcaaacatgctaaaaaaagagattggagggatcaatattgtaggtggtaatgacaaa |
32971524 |
T |
|
| Q |
100 |
attaaccccnnnnnnnttaaatgtggagaatcctattcccatgtctgcatatttgtaaaagaagtaatgcaatttattatggtcatagagtaccaaatag |
199 |
Q |
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| T |
32971525 |
attaaccccaaaa---ttaaatatggagaatcctattcccatgtctacatatttgtaaaagaagtaatgcaatttattatggtcatagagtaccaaatag |
32971621 |
T |
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| Q |
200 |
gacatttgagatatatacacattatatacaacatttgaggatgctataatatgatgtatgccaccttagatatgttggaaatttttctttcctcatctgg |
299 |
Q |
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| T |
32971622 |
gacatttgaggtatatacacattatatacaacatttgaggatgctataatatgatatatgccaccttagatatattgaaaatttttctttcctcatctgg |
32971721 |
T |
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| Q |
300 |
tttattattttcctcatccttatattctggtaaaatagaaaaggtctttattattttccttggcatgtaaggaaccaatgacagaagagagtaagcgtgc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32971722 |
tttattattttcctcatccttatattctggtaaaatagaaaaggtctttattattttccttggcatgtaaggaaccaatgacagaagggagtaagcgtgc |
32971821 |
T |
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| Q |
400 |
tgnnnnnnntatgaattttcatctgaaattcagaaactcgtgaccagaactacttgttctgttcatatgaatttgtctccaatcaccatcattgtttttc |
499 |
Q |
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|| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32971822 |
tgaaaaaaatatgaattttcatctgaaattcagaaaatcatgaccagaactacttgttatgttcatatgaatttgtctccaatcaccatcattgtttttt |
32971921 |
T |
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| Q |
500 |
tggccagtactgcttccttcagtgcaagttccagcagtgcttttacgacgccgttcattgtgtcgcgctaagcgtcttcggcagcttcgtttt |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32971922 |
tggccagtactgcttccttcagtgcaagttccagcagtgcttttacgacgccgttcattgtgtcgcgctaagcgtcttcggcagcttcgtttt |
32972014 |
T |
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