View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_31 (Length: 334)
Name: NF14395_high_31
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 2289361 - 2289676
Alignment:
| Q |
8 |
agcagcacagaaaagttaagggcactaagtattgataaagtgcatataagaacctaactaccaagctttgcnnnnnnnnn-----gaagcaccaagtatt |
102 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||| ||||||| |
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| T |
2289361 |
agcaccacaaaaaagttaagggcacaaagtattgataaagtgcatataaaaagcttactaccaagctttgcaacaaaaaaaaaaagaagcactaagtatt |
2289460 |
T |
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| Q |
103 |
aactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaattgtttgctat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2289461 |
aactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaactgtttgctat |
2289560 |
T |
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| Q |
203 |
tcatcacttgctgaaatttcattcttaccatgaataatatcttcaacatt---actcactttctcagcaccttcgctttcctctgcgccggatttctctt |
299 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289561 |
tcatcacttgctgaaatttcattcttaccattaataatatcttcaacattgagactcactttctcagcaccttcgctttcctctgcgccggatttctctt |
2289660 |
T |
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| Q |
300 |
gcttataactgctatc |
315 |
Q |
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|||||||||||||||| |
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| T |
2289661 |
gcttataactgctatc |
2289676 |
T |
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