View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_39 (Length: 266)
Name: NF14395_high_39
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 55988492 - 55988739
Alignment:
| Q |
1 |
ccatgtctaagactttcaagtttcaaccataatagcaaagagaatataaatatacactataatcatagtttcaaattgtggtccacatccacaattgcgg |
100 |
Q |
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| T |
55988492 |
ccatatctaagactttcaagtttcaaccataatagcaaagggaatataaatatacactataatcatagtttcaaattgtggtccacatccacaattgcgg |
55988591 |
T |
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| Q |
101 |
tgtgatcttcaatcacgtgtatggcagtatcaggaaccatagccaactttggccatgttctttttcaacaaaaaattgaaattccagaaccccatggcca |
200 |
Q |
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| T |
55988592 |
tgtgatcttcaatcacgtgtatggcagtatcaggaaccatagccaactttggccatgttctttttcaacaaaaaattgaaattccagaaccccaaagcca |
55988691 |
T |
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| Q |
201 |
ttggaatatgaaaccttttataagaaataaatagtgcaatagtatggt |
248 |
Q |
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| T |
55988692 |
ttggaatatgaaaccttttataagaaataaatggtgcaatagtatggt |
55988739 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 38474312 - 38474340
Alignment:
| Q |
92 |
caattgcggtgtgatcttcaatcacgtgt |
120 |
Q |
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| T |
38474312 |
caattgcggtgtgatcttcaatcacgtgt |
38474340 |
T |
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