View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14395_high_40 (Length: 264)

Name: NF14395_high_40
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14395_high_40
NF14395_high_40
[»] chr6 (2 HSPs)
chr6 (80-227)||(12318872-12319019)
chr6 (1-81)||(12318733-12318813)
[»] chr3 (1 HSPs)
chr3 (29-81)||(47040909-47040961)
[»] scaffold0160 (1 HSPs)
scaffold0160 (29-81)||(22905-22957)
[»] chr7 (2 HSPs)
chr7 (40-81)||(23205377-23205418)
chr7 (28-81)||(30006107-30006160)
[»] chr8 (3 HSPs)
chr8 (33-81)||(10871909-10871957)
chr8 (29-81)||(39433404-39433456)
chr8 (29-81)||(40482333-40482385)
[»] chr5 (1 HSPs)
chr5 (29-81)||(11156831-11156883)
[»] chr4 (1 HSPs)
chr4 (29-81)||(34969408-34969460)
[»] chr1 (1 HSPs)
chr1 (27-79)||(4302444-4302496)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 12318872 - 12319019
Alignment:
Q  80 gtaaaaacttcaatgataataaaataaacaatgatacaatactagcaaatacaactcataaaaagagattacaaagttacttgttagggcttaaacataa 179  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12318872 gtaaaaacttcaatgataataaaataaacaatgatacaataccagcaaatacaactcataaaaagagattactaagttacttgttagggcttaaacataa 12318971  T
Q  180 caaatagaataccatgctcataaacaaagtcaagttatgacatttggc 227  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12318972 caaatagaacaccatgctcataaacaaagtcaagttatgacatttggc 12319019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12318733 - 12318813
Alignment:
Q  1 tagaagatagatagatggttagatagaagtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||    
T  12318733 tagaagatagatagattgttagatagaagtcctcgtgagcttagttcagttgctatgaacaatacataatgtatgcaaggt 12318813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 47040961 - 47040909
Alignment:
Q  29 gtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||| |||||    
T  47040961 gtcctcgtaagcttagttcagttgatatgaacaatgcataatgtatgtaaggt 47040909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 22905 - 22957
Alignment:
Q  29 gtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||| |||||||||||||||||||||| ||| |||||  ||||||||||    
T  22905 gtcctcgtgagcttagtttagttgatatgaacaatgcataaaatatgcaaggt 22957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 23205418 - 23205377
Alignment:
Q  40 cttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    ||||||| |||||||||||||||||||||||  |||||||||    
T  23205418 cttagttcagttgatatgaataatacataataaatgcaaggt 23205377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 30006160 - 30006107
Alignment:
Q  28 agtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    ||||||||| | ||||| | ||||| |||||||||| |||||||||||||||||    
T  30006160 agtcctcgtgaacttagctcagttggtatgaataatgcataatgtatgcaaggt 30006107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 10871957 - 10871909
Alignment:
Q  33 tcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||| ||||||||||||||| |||| | ||| |||||||||||||||||    
T  10871957 tcgtgagcttagtttagttggtatggacaatgcataatgtatgcaaggt 10871909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 39433404 - 39433456
Alignment:
Q  29 gtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||| ||||||| | |||||||||||| |||||||||  ||||||||||    
T  39433404 gtcctcgtgagcttagctcagttgatatgaacaatacataaaatatgcaaggt 39433456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 40482333 - 40482385
Alignment:
Q  29 gtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||| |||||| |||||||| |||  |||||| ||||||||||||||||    
T  40482333 gtcctcgtgagcttaatttagttggtatagataatatataatgtatgcaaggt 40482385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 11156831 - 11156883
Alignment:
Q  29 gtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||| ||||||||| ||||| |||| |||||||||||| ||| ||||||    
T  11156831 gtcctcgtgagcttagttcagttgttatggataatacataatatatacaaggt 11156883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 34969460 - 34969408
Alignment:
Q  29 gtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaaggt 81  Q
    |||||||||| ||||  |||||||||||||| |||| ||||| ||||||||||    
T  34969460 gtcctcgtaaacttaacttagttgatatgaacaatatataatatatgcaaggt 34969408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 4302444 - 4302496
Alignment:
Q  27 aagtcctcgtaagcttagtttagttgatatgaataatacataatgtatgcaag 79  Q
    |||||||||||| ||||||||||||| |||| | ||| |||||| ||||||||    
T  4302444 aagtcctcgtaaacttagtttagttggtatggacaatgcataatatatgcaag 4302496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University