View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14395_high_41 (Length: 250)
Name: NF14395_high_41
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_41 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 26320426 - 26320208
Alignment:
| Q |
16 |
atgagtgagtaaa-aattaggaagtgacattgtttagttttaattaagataatatagagtgggaagttttaaaagagtaaggcaaatgtttttaaaggtg |
114 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||||||| |||||| ||||||||||||||| | ||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
26320426 |
atgagtgaataaagaattaagaagtgacattgtttacatttaatgaagataatatagagtagaaagttataaaagagtatgataaatgtttttaaaggtg |
26320327 |
T |
|
| Q |
115 |
tcacatagacataataat---ctt---ttaagaatgaatcaagtttagtggatgagaagt-tttttagaggtgccacataggcacaatgcttctcaatag |
207 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
26320326 |
ccacatagacataataataatcttagcttaagaatgaatcaaatttagttgatgagaagtgtttttagaggtgccacataggcacaatgcttgtctatag |
26320227 |
T |
|
| Q |
208 |
ataacccaagtttagaatt |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26320226 |
ataacccaagtttagaatt |
26320208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 12318651 - 12318721
Alignment:
| Q |
180 |
gccacataggcacaatgcttctcaatagataacccaagtttagaattcaaagatgatgataataataataa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12318651 |
gccacataggcacaatgcttctcaatagataacctaagtttagaattcaaagatgatgatgataataataa |
12318721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 16244 - 16272
Alignment:
| Q |
167 |
gttttttagaggtgccacataggcacaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16244 |
gttttttagaggtgccacataggcacaat |
16272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University