View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_42 (Length: 248)
Name: NF14395_high_42
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 54642034 - 54641819
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54642034 |
gaacctgaaactgaattggaacggttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
54641935 |
T |
|
| Q |
117 |
aagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagcaa |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54641934 |
aagagaaaggctgggaagatgtacaaatggggaaaataga--gagatgtagaaaatgcccgtatgcatgtcatgattgtggaaatggaacaggagagcaa |
54641837 |
T |
|
| Q |
217 |
aacggatttgtgcaaact |
234 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
54641836 |
aacggatttgtgcaaact |
54641819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 54938519 - 54938301
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54938519 |
gaacctgaaactgaattggagcggttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggag |
54938420 |
T |
|
| Q |
117 |
aagagaaaggctgggaa-gatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagca |
215 |
Q |
| |
|
|||||||||| | |||| |||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
54938419 |
aagagaaaggtttggaaggatgaagaaatggggaaaatagagagatatgtagaaaatgcccatatgcatgtcatgattatggaaatggaacaggagagca |
54938320 |
T |
|
| Q |
216 |
aaacggatttgtgcaaact |
234 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
54938319 |
aaacggatttgtgcaaact |
54938301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 54641615 - 54641479
Alignment:
| Q |
96 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
54641615 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagaga--tgtagaaaatgcccatatgcatgtcatgattgt |
54641518 |
T |
|
| Q |
196 |
ggaaatggaacaggagagcaaaacggatttgtgcaaact |
234 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
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|
| T |
54641517 |
ggaaatggaacaagagagcaaaacggatttgtgcaaact |
54641479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 13077991 - 13078208
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13077991 |
gaacctgaaactgaattggagtggttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggag |
13078090 |
T |
|
| Q |
117 |
aagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagcaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
13078091 |
aagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgtggaaatgggacaggagagcaa |
13078190 |
T |
|
| Q |
217 |
aacggatttgtgcaaact |
234 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
13078191 |
aacagatttgtgcaaact |
13078208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 39984493 - 39984276
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39984493 |
gaacctgaaactgaattggagtggttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggag |
39984394 |
T |
|
| Q |
117 |
aagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagcaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
39984393 |
aagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgtggaaatgggacaggagagcaa |
39984294 |
T |
|
| Q |
217 |
aacggatttgtgcaaact |
234 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
39984293 |
aacagatttgtgcaaact |
39984276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 14685017 - 14685234
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
14685017 |
gaacctgaaactgaattggagtggttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggag |
14685116 |
T |
|
| Q |
117 |
aagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagcaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
14685117 |
aagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgtggaaatgggacaggagagcaa |
14685216 |
T |
|
| Q |
217 |
aacggatttgtgcaaact |
234 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
14685217 |
aacagatttgtgcaaact |
14685234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 40421841 - 40422058
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40421841 |
gaacctgaaactgaattggagtggttgacgactcaaggttcattcaatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggag |
40421940 |
T |
|
| Q |
117 |
aagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagcaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
40421941 |
aagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgtggaaatgggacaggagagcaa |
40422040 |
T |
|
| Q |
217 |
aacggatttgtgcaaact |
234 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
40422041 |
aacagatttgtgcaaact |
40422058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 21306873 - 21307090
Alignment:
| Q |
17 |
gaacctgaaactgaattggaacggttgacgactcaagattcattcaatattcaaccacaagatattgaccagggaaatccaaatcccaccgcgataggag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21306873 |
gaacctgaaactgaattggagtggttgacgactcaaggttcattcgatattcaaccacaagatattgaccagggcaatccaaatcccaccgcgataggag |
21306972 |
T |
|
| Q |
117 |
aagagaaaggctgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgcccgtatgtatgtcatgattgtggaaatggaacaggagagcaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
21306973 |
aagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgtggaaatgggacaggagagcaa |
21307072 |
T |
|
| Q |
217 |
aacggatttgtgcaaact |
234 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
21307073 |
aacagatttgtgcaaact |
21307090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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