View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_48 (Length: 215)
Name: NF14395_high_48
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 38244789 - 38244970
Alignment:
| Q |
18 |
gaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
38244789 |
gaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttcctgttgttg |
38244888 |
T |
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| Q |
118 |
cttgtgctgataagaaacatgcttcaatcaatgatgatgatcataatatgattgctctcacccctcttccaagtgggataaa |
199 |
Q |
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| T |
38244889 |
cttgtgctgataagtcacatgcttcaatcaataatgatgatcataatatgatttctctcacccctcttccaagtgggataaa |
38244970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 38261089 - 38261270
Alignment:
| Q |
18 |
gaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |
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| T |
38261089 |
gaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttcctgttattg |
38261188 |
T |
|
| Q |
118 |
cttgtgctgataagaaacatgcttcaatcaatgatgatgatcataatatgattgctctcacccctcttccaagtgggataaa |
199 |
Q |
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| T |
38261189 |
cttgtggtgataagtcacatgcttatgtcaatgatgatggtcataatatgattgctctcacccctcttccaaatgggataaa |
38261270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 2589648 - 2589546
Alignment:
| Q |
18 |
gaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
117 |
Q |
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||||| |||||||||||||||| |||| ||| ||||||||||| ||| | |||||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
2589648 |
gaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatggaacaactacttttgttccagttgttg |
2589549 |
T |
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| Q |
118 |
ctt |
120 |
Q |
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||| |
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| T |
2589548 |
ctt |
2589546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 10299700 - 10299610
Alignment:
| Q |
26 |
aaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgtt |
116 |
Q |
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|||||||||||||| |||| ||| ||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
10299700 |
aaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgatagaacaactacttttgttccggttgtt |
10299610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 2589833 - 2589923
Alignment:
| Q |
27 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
117 |
Q |
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||||||||||||| |||||||| | ||||||||| |||||| |||||||| ||||||| |||| ||| |||||||||| ||||||| |
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| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttg |
2589923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 47285601 - 47285507
Alignment:
| Q |
18 |
gaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgt |
112 |
Q |
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||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| |||| |||| ||||||| ||||| |||| |
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| T |
47285601 |
gaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgatggaacaactactcttgtttctgt |
47285507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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