View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_49 (Length: 215)
Name: NF14395_high_49
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 38673756 - 38673945
Alignment:
| Q |
8 |
ggagaagcataggtaaaccatctctgagacatgaaatgataagttttgacagcagattcaacatcatccttgtgaattccaacagaaaccctcattatca |
107 |
Q |
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| T |
38673756 |
ggagaagcatgggtaaaccatctctgagacatgaaatgataagttttgacagcagattcaacatcatccttgtgaattccaacagaaaccctcattatca |
38673855 |
T |
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| Q |
108 |
tatgttgaggtctttccacaaccactccttgaaccttcaacagataagacctctctagggttttgaacccaaagtaatcatagtcaaaat |
197 |
Q |
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| T |
38673856 |
tatgttgaggtctttccacaaccactccttgaaccttcaacagataagacctctctagggttttgaacccaaagtaatcgtagtcaaaat |
38673945 |
T |
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Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 2061209 - 2061399
Alignment:
| Q |
7 |
aggagaagcataggtaaaccatctctgagacatgaaatgataagttttgacagcagattcaacatcatccttgtgaattccaacagaaaccctcattatc |
106 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2061209 |
aggagaagcatgagtgaaccatctctgagacatgaaatgataagttttgacagcagattcaacatcatctttgtgaattccaacagaaaccctcattatc |
2061308 |
T |
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| Q |
107 |
atatgttgaggtctttccacaaccactccttgaaccttcaacagataagacctctctagggttttgaacccaaagtaatcatagtcaaaat |
197 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
2061309 |
atatgttgaggtctttccacaaccactccttcaactttcaacagataagacctttctagggttttgaatccaaagtaatcgtagtcaaaat |
2061399 |
T |
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