View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14395_high_6 (Length: 521)

Name: NF14395_high_6
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14395_high_6
NF14395_high_6
[»] chr3 (3 HSPs)
chr3 (246-450)||(29134422-29134630)
chr3 (246-468)||(9460581-9460808)
chr3 (406-462)||(43808780-43808836)
[»] chr6 (3 HSPs)
chr6 (274-461)||(18332409-18332595)
chr6 (355-453)||(21544814-21544912)
chr6 (394-462)||(34704055-34704123)
[»] chr1 (2 HSPs)
chr1 (288-450)||(51386959-51387128)
chr1 (406-475)||(22370287-22370356)
[»] chr4 (2 HSPs)
chr4 (397-470)||(13629545-13629618)
chr4 (406-462)||(19514448-19514504)
[»] chr2 (3 HSPs)
chr2 (406-462)||(41579254-41579310)
chr2 (355-424)||(39356711-39356780)
chr2 (410-462)||(28000674-28000726)
[»] chr7 (1 HSPs)
chr7 (406-467)||(39266853-39266914)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 29134630 - 29134422
Alignment:
Q  246 gtaacacgttaatat-gccttggtaaacagcataaatcatgctgagtgggagattatttgggcttgcatgggatacaccaaag-tca-------atttga 336  Q
    ||||||||||||||| |||||||||||| ||||||||||    |||| ||||||||||||||||||||| ||||||||||||| |||       ||||||    
T  29134630 gtaacacgttaatattgccttggtaaaccgcataaatca----gagtaggagattatttgggcttgcataggatacaccaaaggtcagtttgaaatttga 29134535  T
Q  337 aattcaaattgtacttgcataggagggaaatattttagagttgtatgcattagtatataatgatagataattagagggaaaaattagggctaatggttgc 436  Q
    |||||||||||||| | |||| ||||||||||||||||  |||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||    
T  29134534 aattcaaattgtacgttcatacgagggaaatattttaggattgtatgc-ttagcatttaatgatagataattagagggaaaaattagggttaatggttgc 29134436  T
Q  437 atgatctaataagc 450  Q
    ||||||||||||||    
T  29134435 atgatctaataagc 29134422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 246 - 468
Target Start/End: Complemental strand, 9460808 - 9460581
Alignment:
Q  246 gtaacacgttaatatg-ccttggtaaacagcataaatcatgctgagtgggagattatttgggcttgcatgggatacaccaaag-tca-------atttga 336  Q
    |||||||||||||||| ||||||||||| ||||||||||    |||| |||||||||||||| |||||| ||||||||||||| |||       ||||||    
T  9460808 gtaacacgttaatatggccttggtaaaccgcataaatca----gagtaggagattatttgggattgcataggatacaccaaaggtcagtttgaaatttga 9460713  T
Q  337 aattcaaattgtacttgcataggagggaaatattttagagttgtatgcattagtatataatgatagataa-ttagagggaaaaattagggctaatggttg 435  Q
    ||||||||||| |||| |||||||||||||||||||||  |||||||| |||| || ||||||||||||| ||||||||||||||||||| |||||||||    
T  9460712 aattcaaattgaactttcataggagggaaatattttaggattgtatgc-ttagcatttaatgatagataaattagagggaaaaattagggttaatggttg 9460614  T
Q  436 catgatctaataagcttttagaataagagatgt 468  Q
    ||||| ||||||||| ||||||||||| |||||    
T  9460613 catgacctaataagcatttagaataagggatgt 9460581  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 462
Target Start/End: Original strand, 43808780 - 43808836
Alignment:
Q  406 attagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataag 462  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||| |||||| ||||    
T  43808780 attagagggaaaaattagggttaatgatagcatgacctaataagcatttagagtaag 43808836  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 274 - 461
Target Start/End: Original strand, 18332409 - 18332595
Alignment:
Q  274 gcataaatcatgctgagtgggagattatttgggcttgcatgggatacaccaaa-gtcaatttgaaatt-------caaattgtacttgcataggagggaa 365  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| |||||       ||||||| ||||||||||||| |||    
T  18332409 gcataaatcatgctgagtggatgattatttgggcttgcatgggatacaccaaaagtcaattttaaattttaaattcaaattgaacttgcataggagcgaa 18332508  T
Q  366 atattttagagttgtatgcattagtatataatgatagataattagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataa 461  Q
     | ||||||         |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  18332509 tttttttag---------cattagcatttaatgatagataattagagggaaaaattagggttaatggttgcatgatttaataagcatttagaataa 18332595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 453
Target Start/End: Original strand, 21544814 - 21544912
Alignment:
Q  355 ataggagggaaatattttagagttgtatgcattagtatataatgatagataattagagggaaaaattagggctaatggttgcatgatctaataagcttt 453  Q
    ||||||||||||| |||||| |||||||| ||||| || |||||| |||| |||||||||||||||||||  ||  ||||||| || ||||||| ||||    
T  21544814 ataggagggaaattttttagggttgtatggattagcatttaatgacagattattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 21544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 462
Target Start/End: Complemental strand, 34704123 - 34704055
Alignment:
Q  394 taatgatagataattagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataag 462  Q
    ||||| |||||||||||||||||||||||||  || | || ||| || ||||||||| |||||||||||    
T  34704123 taatgctagataattagagggaaaaattaggtttagtagtagcaagacctaataagcatttagaataag 34704055  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 288 - 450
Target Start/End: Original strand, 51386959 - 51387128
Alignment:
Q  288 gagtgggagattatttgggcttgcatgggatacaccaaag-tca-------atttgaaattcaaattgtacttgcataggagggaaatattttagagttg 379  Q
    |||| ||||||||||||||||||||| | ||||||||||| |||       |||||||||| |||||| |||| |||||||||||||||||||||  |||    
T  51386959 gagtaggagattatttgggcttgcatagaatacaccaaaggtcagtttgaaatttgaaatttaaattgaactttcataggagggaaatattttaggattg 51387058  T
Q  380 tatgcattagtatataatgatagataattagagggaaaaattagggctaatggttgcatgatctaataagc 450  Q
    ||||| |||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  51387059 tatgc-ttagcatttaatgttagataattagagggaaaaattagggttaatggttgcatgacctaataagc 51387128  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 475
Target Start/End: Complemental strand, 22370356 - 22370287
Alignment:
Q  406 attagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataagagatgtacgtaag 475  Q
    |||||||||||||||||||| ||||| | | |||| ||||||||| |||||| |||| ||| || |||||    
T  22370356 attagagggaaaaattagggttaatgatagtatgacctaataagcatttagagtaagggatataagtaag 22370287  T

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Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 397 - 470
Target Start/End: Complemental strand, 13629618 - 13629545
Alignment:
Q  397 tgatagataattagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataagagatgtac 470  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||| |||||||    
T  13629618 tgatagataattagagggaaaaattagggttaatggttgcatgacctgataagcatttagaataagggatgtac 13629545  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 19514504 - 19514448
Alignment:
Q  406 attagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataag 462  Q
    |||||||||||||||||||   || ||||||| || || ||||||||||||||||||    
T  19514504 attagagggaaaaattaggttaaaaggttgcaagaccttataagcttttagaataag 19514448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 41579310 - 41579254
Alignment:
Q  406 attagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataag 462  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||| |||||| ||||    
T  41579310 attagagggaaaaattagggttaatgatagcatgacctaataagcatttagagtaag 41579254  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 39356780 - 39356711
Alignment:
Q  355 ataggagggaaatattttagagttgtatgcattagtatataatgatagataattagagggaaaaattagg 424  Q
    ||||||||||||||| |||| ||| | || ||||| |  |||||| |||| |||||||||||||||||||    
T  39356780 ataggagggaaatatattagggttatgtggattagcaattaatgacagattattagagggaaaaattagg 39356711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 28000726 - 28000674
Alignment:
Q  410 gagggaaaaattagggctaatggttgcatgatctaataagcttttagaataag 462  Q
    |||||||||||||||| ||||| | |||||| |||| |||| |||||||||||    
T  28000726 gagggaaaaattagggttaatgatagcatgacctaacaagcatttagaataag 28000674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 467
Target Start/End: Original strand, 39266853 - 39266914
Alignment:
Q  406 attagagggaaaaattagggctaatggttgcatgatctaataagcttttagaataagagatg 467  Q
    |||||||||||||||||||   |||| | ||| || ||||||||| ||||||||||||||||    
T  39266853 attagagggaaaaattaggttaaatgatagcaagacctaataagcatttagaataagagatg 39266914  T

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