View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_high_9 (Length: 508)
Name: NF14395_high_9
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 35 - 381
Target Start/End: Complemental strand, 1715243 - 1714880
Alignment:
| Q |
35 |
tcgctcgtatctctccgacagccgccgtagccgctgccgtgattcattctctcatttcatcttatctgcgatatttcggaacaggtgagtagcaaatttc |
134 |
Q |
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| T |
1715243 |
tcgcttgtatctctccgacagccgccgtagccgctgccgtgattcattctctcatttcatcttatctgcgatattttggaacaggtgagtagcaaatttc |
1715144 |
T |
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| Q |
135 |
ccagccaaca-----------------attccgcattgcatctctttcattctatgttcgtttgctttaactaataattatatcatttttccttaattat |
217 |
Q |
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| T |
1715143 |
ccagccaacactattttcatattctcaattccgcattgcatctctttcattctatgttcgtttgctttaactaataattatatcatttttccttaatcat |
1715044 |
T |
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| Q |
218 |
gcttgtggaagaaagaaattgtcgtcactagcgtcaagactagaactattgtattcgtttttacttgtatatttatggtatgttctcaatattttagaat |
317 |
Q |
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| T |
1715043 |
gcttgtggaagaaagaaattgtcgtcactagcgtcaagactagaactattgtattcgtgtttacttgtatatttatggcatgttctcaatattttagaat |
1714944 |
T |
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| Q |
318 |
ataccacaagtttaactaatattgttccggttgtagttaaattattattttttgttcaaattgg |
381 |
Q |
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| T |
1714943 |
ataccacaagtttaactaatattgttccggttgtagttaaattattattttttggtcaaattgg |
1714880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 1713433 - 1713382
Alignment:
| Q |
448 |
tgattgaatttatagcaatatgtgtaacatatattctccatgtggcctatgc |
499 |
Q |
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| T |
1713433 |
tgattgaatttgtagcaatatttgtaacatatattctccatgtggcctatgc |
1713382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 30018324 - 30018228
Alignment:
| Q |
34 |
ctcgctcgtatctctccgacagccgccgtagccgctgccgtgattcattctctcatttcatcttatctgcgatatttcggaacaggtgagtagcaaattt |
133 |
Q |
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| T |
30018324 |
ctcgctcgtatctctccgatcgccaccgtcgccgc---cgtgcttcactctcttatttcatcttagctgcgacatttcgtaacaggtgagtagaaaattt |
30018228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 30016553 - 30016502
Alignment:
| Q |
448 |
tgattgaatttatagcaatatgtgtaacatatattctccatgtggcctatgc |
499 |
Q |
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| T |
30016553 |
tgattgaatttgtagcaataggtgtaacatacattctccatgtagcctatgc |
30016502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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