View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14395_low_11 (Length: 514)

Name: NF14395_low_11
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14395_low_11
NF14395_low_11
[»] chr2 (11 HSPs)
chr2 (20-360)||(41700720-41701065)
chr2 (366-507)||(41701169-41701310)
chr2 (216-289)||(24450600-24450673)
chr2 (181-263)||(30930185-30930269)
chr2 (197-289)||(24548450-24548543)
chr2 (197-278)||(28143928-28144012)
chr2 (215-273)||(45002376-45002433)
chr2 (238-278)||(3912528-3912568)
chr2 (197-289)||(24450980-24451074)
chr2 (219-272)||(630171-630224)
chr2 (238-278)||(30930058-30930098)
[»] chr7 (32 HSPs)
chr7 (197-289)||(33536670-33536764)
chr7 (181-278)||(20561579-20561678)
chr7 (184-278)||(2486377-2486473)
chr7 (181-289)||(21665628-21665737)
chr7 (218-278)||(8237847-8237907)
chr7 (215-287)||(44603916-44603988)
chr7 (215-278)||(1502224-1502287)
chr7 (219-278)||(2739815-2739874)
chr7 (208-278)||(25480486-25480556)
chr7 (218-278)||(18869528-18869588)
chr7 (215-263)||(44606952-44607000)
chr7 (222-289)||(18869739-18869806)
chr7 (220-278)||(8669610-8669668)
chr7 (199-278)||(9669436-9669517)
chr7 (220-289)||(8669738-8669807)
chr7 (220-289)||(8669877-8669946)
chr7 (197-278)||(29529633-29529714)
chr7 (221-289)||(24865204-24865272)
chr7 (184-289)||(33536854-33536961)
chr7 (215-278)||(3743122-3743185)
chr7 (197-289)||(9669649-9669742)
chr7 (216-287)||(9677059-9677130)
chr7 (219-278)||(21666244-21666303)
chr7 (205-289)||(28644942-28645028)
chr7 (232-289)||(21666075-21666132)
chr7 (199-289)||(24718992-24719084)
chr7 (219-272)||(24719213-24719266)
chr7 (219-276)||(28645295-28645352)
chr7 (245-289)||(14657334-14657378)
chr7 (197-278)||(29239370-29239453)
chr7 (218-289)||(35144569-35144643)
chr7 (218-278)||(42586214-42586274)
[»] chr4 (16 HSPs)
chr4 (215-289)||(25051198-25051272)
chr4 (181-289)||(25051331-25051440)
chr4 (215-289)||(25051038-25051112)
chr4 (184-278)||(37996671-37996767)
chr4 (219-287)||(11132268-11132336)
chr4 (215-278)||(32668835-32668898)
chr4 (199-278)||(13540460-13540541)
chr4 (182-272)||(19583368-19583457)
chr4 (197-270)||(16177287-16177362)
chr4 (197-289)||(34852996-34853088)
chr4 (197-289)||(13540673-13540766)
chr4 (216-287)||(13542003-13542074)
chr4 (222-272)||(19585334-19585384)
chr4 (184-289)||(25446942-25447047)
chr4 (230-278)||(10326111-10326159)
chr4 (475-507)||(53998433-53998465)
[»] chr1 (22 HSPs)
chr1 (205-289)||(43761347-43761433)
chr1 (216-289)||(3592626-3592699)
chr1 (184-278)||(34903612-34903708)
chr1 (222-278)||(39313088-39313144)
chr1 (238-303)||(3591774-3591840)
chr1 (215-277)||(11080645-11080707)
chr1 (181-272)||(15198750-15198843)
chr1 (184-289)||(16682063-16682169)
chr1 (216-289)||(15913300-15913373)
chr1 (205-287)||(32034942-32035026)
chr1 (222-289)||(16086900-16086967)
chr1 (238-289)||(39157547-39157598)
chr1 (185-278)||(39312935-39313032)
chr1 (215-277)||(15121826-15121887)
chr1 (215-277)||(15146014-15146075)
chr1 (219-289)||(46022945-46023015)
chr1 (199-261)||(3591906-3591970)
chr1 (219-272)||(48994897-48994950)
chr1 (196-289)||(15114838-15114933)
chr1 (196-289)||(15123048-15123143)
chr1 (196-289)||(15139354-15139449)
chr1 (196-289)||(15147236-15147331)
[»] chr6 (17 HSPs)
chr6 (185-278)||(31794944-31795038)
chr6 (221-289)||(11959866-11959934)
chr6 (184-272)||(5089615-5089705)
chr6 (215-302)||(11854208-11854295)
chr6 (205-261)||(15555445-15555501)
chr6 (222-289)||(2999472-2999539)
chr6 (215-278)||(15554430-15554493)
chr6 (184-297)||(15556434-15556547)
chr6 (224-283)||(15554776-15554836)
chr6 (215-263)||(15555126-15555174)
chr6 (181-268)||(31794770-31794860)
chr6 (221-276)||(15555933-15555988)
chr6 (222-268)||(15556292-15556338)
chr6 (215-289)||(15558795-15558868)
chr6 (183-278)||(4979870-4979964)
chr6 (219-289)||(7566121-7566188)
chr6 (197-278)||(31480956-31481039)
[»] chr5 (24 HSPs)
chr5 (239-289)||(40373650-40373700)
chr5 (181-268)||(41912815-41912904)
chr5 (181-264)||(26657521-26657605)
chr5 (181-264)||(26929109-26929193)
chr5 (181-276)||(3419995-3420091)
chr5 (222-289)||(17762113-17762180)
chr5 (197-278)||(1832902-1832982)
chr5 (227-289)||(37447741-37447803)
chr5 (197-278)||(40318368-40318448)
chr5 (197-278)||(41409092-41409172)
chr5 (197-278)||(17762794-17762875)
chr5 (238-303)||(41912704-41912768)
chr5 (216-288)||(17694034-17694106)
chr5 (205-278)||(22554745-22554820)
chr5 (183-251)||(12048740-12048810)
chr5 (219-278)||(21118353-21118412)
chr5 (220-274)||(54194-54248)
chr5 (197-251)||(17694197-17694253)
chr5 (181-287)||(21117522-21117630)
chr5 (222-259)||(22554269-22554306)
chr5 (204-277)||(3419811-3419886)
chr5 (219-263)||(22555121-22555165)
chr5 (475-507)||(25701032-25701064)
chr5 (215-287)||(40373794-40373866)
[»] chr3 (21 HSPs)
chr3 (219-289)||(1102328-1102398)
chr3 (238-320)||(3142476-3142558)
chr3 (184-289)||(30081519-30081626)
chr3 (218-280)||(7165500-7165562)
chr3 (221-289)||(8494242-8494310)
chr3 (218-278)||(20126209-20126269)
chr3 (205-289)||(4144981-4145067)
chr3 (199-278)||(31720862-31720941)
chr3 (197-289)||(37834445-37834538)
chr3 (224-289)||(4160961-4161026)
chr3 (181-261)||(495180-495262)
chr3 (205-289)||(4161146-4161232)
chr3 (181-289)||(12946498-12946607)
chr3 (205-277)||(13698423-13698497)
chr3 (231-290)||(27532317-27532376)
chr3 (197-272)||(494645-494722)
chr3 (197-289)||(20105992-20106083)
chr3 (204-257)||(20126414-20126467)
chr3 (214-289)||(3142158-3142234)
chr3 (215-247)||(3142380-3142412)
chr3 (222-278)||(25810419-25810475)
[»] chr8 (11 HSPs)
chr8 (216-289)||(34913635-34913708)
chr8 (207-251)||(25699301-25699345)
chr8 (215-289)||(13004036-13004108)
chr8 (183-289)||(42498982-42499089)
chr8 (181-289)||(36648068-36648177)
chr8 (209-273)||(6128112-6128176)
chr8 (222-320)||(25699650-25699748)
chr8 (221-278)||(34913778-34913835)
chr8 (184-289)||(25721726-25721833)
chr8 (197-278)||(36647432-36647515)
chr8 (238-290)||(36647938-36647990)
[»] scaffold1609 (3 HSPs)
scaffold1609 (204-272)||(584-654)
scaffold1609 (219-289)||(251-320)
scaffold1609 (205-263)||(406-466)
[»] scaffold0028 (1 HSPs)
scaffold0028 (184-278)||(77439-77534)
[»] scaffold0636 (1 HSPs)
scaffold0636 (181-289)||(1121-1231)
[»] scaffold0013 (1 HSPs)
scaffold0013 (183-278)||(51160-51256)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 41700720 - 41701065
Alignment:
Q  20 acacataccaggtactaggatgcacgggtcgtgagccggccactgcccttttggaattgtttcaaattagtgttttttatcatagaatttctagcctatc 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||   ||| || ||||| |||| |       
T  41700720 acacataccaggtactaggatgcacgggtcgtgagccagccactgcccttttgaaattgttttaaattagtgttt---atcgtaaaatttttagcttggt 41700816  T
Q  120 aatttgtagttattcgattttgtttac-ggttgtgtattcaagagatgaatgtgaatttctttgcaaatatttgacgttgttttccatataaaatcaaaa 218  Q
    ||||| ||| |||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  41700817 aatttataggtattcgattttgcttattggttgtatattcaagagatgaatgtgaatttctttgcaaatatttgacgttgttttgcatataaaataaaaa 41700916  T
Q  219 tatttaatagaaacactaaattaatgttgatatg-ttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttc---- 313  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||        
T  41700917 tatttaataaaaacactaaattaat-ttgatatgtttgaaaatagttatgagttttcaaaactttctcacatggatgtatgaaaaattgattcttcatat 41701015  T
Q  314 --atatatataagcacattagagtgtgacac-aatattgatcgaaacaaa 360  Q
      ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41701016 atatatatataagcacattagagtgtgacacaaatattgatcgaaacaaa 41701065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 366 - 507
Target Start/End: Original strand, 41701169 - 41701310
Alignment:
Q  366 ttctcatataaattatcannnnnnnccaatttcatttatccgatttctgcatgttatccttcggtaattacctccattcctttttggaattgtttcaaat 465  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701169 ttctcatataaattatcatttttttccaatttcatttatccgatttctgcatgttatccttcggtaattacctccattcctttttggaattgtttcaaat 41701268  T
Q  466 cagcgtttttctgtttaccatctcttgtgttgtttcttctct 507  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  41701269 cagcgtttctctgtttaccatctcttgtgttgtttcttctct 41701310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 24450600 - 24450673
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||||||||| ||| |||||||||| || |||||||| |||||||||||||| ||| ||||||    
T  24450600 aaatatttaatagaaacactacattgatgttgatattttaaaaatagtcatgagttttcaaaattttatcatat 24450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 30930185 - 30930269
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatca--aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 263  Q
    ||||||||||| | | |||||| |||||||||| |  ||||||||||||||||||||| |||||||||||||| || ||||||||    
T  30930185 tgcaaatatttaatggtgttttgcatataaaataataaaatatttaatagaaacactatattaatgttgatattttaaaaatagt 30930269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 24548543 - 24548450
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| ||||  ||||||||| |||||||| |||||| ||| ||| || ||||||||||||||||||||||| ||| ||||||    
T  24548543 tgttttgcatataaaataaaaagttatttaatataaacactacattaattttgttat-ttaaaaatagttatgagttttcaaaattttatcatat 24548450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 28144012 - 28143928
Alignment:
Q  197 tgttttccatataaaatcaaaa---tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| |||||||||| ||||   ||||||||||||| |||| |||||||||||| | ||||||||||| |||||||| |||||    
T  28144012 tgttttacatataaaataaaaaagatatttaatagaaaaactacattaatgttgattttttgaaaatagtgatgagtttccaaaa 28143928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 45002376 - 45002433
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagtttt 273  Q
    |||||||||||| |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  45002376 aaaatatttaattgaaacactaaattaatgttggtat-tttcaaatagttatgagtttt 45002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 3912528 - 3912568
Alignment:
Q  238 attaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  3912528 attaatgttgatattttgaaaatagtaatgagttttcaaaa 3912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 24450980 - 24451074
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| ||||  ||||||||||| | |||| |||  |||||| || |||||||||||||||| ||| ||||| ||| ||||||    
T  24450980 tgttttgcatataaaataaaaagttatttaatagacaaactacattggtgttgaaattttgaaaatagttatgactttccaaaattttatcatat 24451074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 630171 - 630224
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | ||||||    
T  630171 tatttaagagaaacactatattaatgttgataatttgaaaatagtcacgagttt 630224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 30930058 - 30930098
Alignment:
Q  238 attaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  30930058 attaatgttgatatgttgaaaatagtcataaattttcaaaa 30930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 33536764 - 33536670
Alignment:
Q  197 tgttttccatataaaatcaaaatat--ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| ||||| |  ||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  33536764 tgttttgcatataaaataaaaatttaattaatagaaacactatattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatat 33536670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 20561579 - 20561678
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaa--atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||| ||| |||||| |||||||||| | |  |||||||  ||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||    
T  20561579 tgcaaatatttaacggtgttttgcatataaaataatagaatatttataagaaacactaaattaatattgatattttgaaaatagtcatgagtttttaaaa 20561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 2486473 - 2486377
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||| ||||| |||| ||| |||||| |||||  || |||||||||||||| |||||| || |||| || |||||||||||||||||||||||    
T  2486473 aaatatttaacgttattttgcatgtaaaattaaaatttatctaatagaaacactacattaattttaatattttaaaaatagttatgagttttcaaaa 2486377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 21665628 - 21665737
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 279  Q
    ||||||||||| | | ||||||  ||||||||| |||| |||||||||||||||||| ||| |||||||||| || |||||||| | ||||||| ||||     
T  21665628 tgcaaatatttaatggtgttttgtatataaaataaaaaatatttaatagaaacactatatttatgttgatattttaaaaatagtcacgagtttttaaaag 21665727  T
Q  280 tttctcatat 289  Q
    ||| ||||||    
T  21665728 tttatcatat 21665737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 8237907 - 8237847
Alignment:
Q  218 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||| ||||||||||||||    
T  8237907 atatttaagagaaacattatattaatgttgatattttgaaaatagtcatgagttttcaaaa 8237847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 44603916 - 44603988
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 287  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||| | || ||||||||| ||| ||||    
T  44603916 aaaatatataatagaaacactaaattaatgttgatatttttaaaatagtcacgatttttcaaaattttatcat 44603988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 1502224 - 1502287
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| || ||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  1502224 aaaataattgatagaaacaataaattaatgtttatattttgaaaatagtgatgagttttcaaaa 1502287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 2739874 - 2739815
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||| || |||||||||||    
T  2739874 tatttaatagacacactacattaatgttgatattttgaaaatagtcataagttttcaaaa 2739815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 25480556 - 25480486
Alignment:
Q  208 taaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| | |||||||||||||||||||| |||||||||||||| || |||||| | ||||||||| ||||    
T  25480556 taaaataataatatttaatagaaacactacattaatgttgatattttaaaaataatcatgagtttttaaaa 25480486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 18869528 - 18869588
Alignment:
Q  218 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||||||||||| || |||||||||||||| ||||||||| | | ||||||||||||    
T  18869528 atatttaatagaaacagtatattaatgttgatattttgaaaataatcacgagttttcaaaa 18869588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 44606952 - 44607000
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 263  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  44606952 aaaatatctaatagaaacactaaattaatgttgatattttaaaaatagt 44607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 18869739 - 18869806
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||| | ||||||||||||| |||||||| | |||||||||||||||| ||| ||||||    
T  18869739 ttaatacaaacacaacattaatgttgataggttgaaaacaattatgagttttcaaaattttatcatat 18869806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 8669668 - 8669610
Alignment:
Q  220 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||  |||||||||||||    
T  8669668 atttaatagaaacactacattaatgttcatattttgaaaacagtcgtgagttttcaaaa 8669610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 9669517 - 9669436
Alignment:
Q  199 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||| |||||||||| ||||  |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||    
T  9669517 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaa 9669436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 8669807 - 8669738
Alignment:
Q  220 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||   |||||||||||| ||| ||||||    
T  8669807 atttaatagaaacactacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcatat 8669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 8669946 - 8669877
Alignment:
Q  220 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||   |||||||||||| ||| ||||||    
T  8669946 atttaatagaaacactacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcatat 8669877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 29529714 - 29529633
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||||| ||||||||| ||||    
T  29529714 tgttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatagtgatgagtttttaaaa 29529633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 24865272 - 24865204
Alignment:
Q  221 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||| |||| |||| |||| ||| ||||||    
T  24865272 tttaataaaaacactacattaattttgatattttgaaaatagtcatgaatttttaaaattttatcatat 24865204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 33536961 - 33536854
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 281  Q
    |||||||| ||  ||||||  ||||||||| ||||  ||||||||||| ||| || ||| |||||||||| ||||||||||| | | |||||||||| ||    
T  33536961 aaatatttaacaatgttttaaatataaaataaaaaattatttaatagacacaatacattcatgttgatattttgaaaatagtcacgtgttttcaaaattt 33536862  T
Q  282 tctcatat 289  Q
    | ||||||    
T  33536861 tatcatat 33536854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 3743185 - 3743122
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||||| || ||| ||||| |||| || |||||||| | ||||||||||||    
T  3743185 aaaatatttaatagaaacattatattgatgtttatattttaaaaatagtcacgagttttcaaaa 3743122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 9669742 - 9669649
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| |||   ||||||||||||||||||  ||||| || |||| ||||||||||| |||||||||||| | ||| ||||||    
T  9669742 tgttttgcatataaaataaaacgttatttaatagaaacactaccttaatttt-atattttgaaaatagtcatgagttttcaatattttatcatat 9669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 9677130 - 9677059
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 287  Q
    ||||||||| |||||||| || |||||||||||||| || ||||||||||| || ||| |||| ||| ||||    
T  9677130 aaatatttattagaaacattatattaatgttgatatttttaaaatagttattaggttttaaaattttatcat 9677059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 21666244 - 21666303
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||| |||| |||||| || |||| ||||||||||| |||| |||||||||    
T  21666244 tatttaatagaaatactacattaattttaatattttgaaaatagtcatgaattttcaaaa 21666303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 28645028 - 28644942
Alignment:
Q  205 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||| |||||  |||||||||| |||||| ||||||||| |||| ||||||||||| | ||||||  |||| ||| ||||||    
T  28645028 atataaaataaaaatttatttaatagacacactacattaatgttaatattttgaaaatagtcacgagtttctaaaattttatcatat 28644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 21666075 - 21666132
Alignment:
Q  232 cactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||| ||||| ||| |||| ||||||||||| |||||||||||||| ||| ||||||    
T  21666075 cactacattaaggtttatattttgaaaatagtcatgagttttcaaaattttatcatat 21666132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 24718992 - 24719084
Alignment:
Q  199 ttttccatataaaatcaaaatat--ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||| |||||||||| ||||| |  |||||||||||||||  ||||||||||||| || |||||| | || | ||||||||| ||| ||||||    
T  24718992 ttttacatataaaataaaaatttaattaatagaaacactacgttaatgttgatattttaaaaatactcataaattttcaaaattttatcatat 24719084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 24719213 - 24719266
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    ||||||||||| |||||| |||||| ||||||| ||||||||||| | ||||||    
T  24719213 tatttaatagacacactacattaatattgatattttgaaaatagtgacgagttt 24719266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 28645352 - 28645295
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 276  Q
    |||||||||||||||||| ||| ||||| |||| || |||||| | ||||||||||||    
T  28645352 tatttaatagaaacactacattgatgtttatatattaaaaataatcatgagttttcaa 28645295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 14657378 - 14657334
Alignment:
Q  245 ttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||| |||||||||||||| ||||||||||||||| || ||||||    
T  14657378 ttgacatgttgaaaatagtcatgagttttcaaaacattatcatat 14657334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 29239370 - 29239453
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| ||| |||||| ||||  ||||||||| |||||||| ||| ||||||||   ||||||||||| ||| ||||||||||    
T  29239370 tgttttgcatgtaaaataaaaagttatttaataaaaacactacattgatgttgattatttgaaaatagtcatgcgttttcaaaa 29239453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 35144569 - 35144643
Alignment:
Q  218 atatttaatagaaacactaaattaatgttg---atatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||| |||| ||| ||||||||||   |||| || ||||| || |||||||||||||| ||||||||||    
T  35144569 atatttaatataaacgctatattaatgttgttgatattttaaaaattgtcatgagttttcaaaattttctcatat 35144643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 42586274 - 42586214
Alignment:
Q  218 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||| | | |||||| |||||    
T  42586274 atatttaatagtaacactacattgatgttgatattttgaaaataatcacgagtttccaaaa 42586214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 25051198 - 25051272
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||| ||| ||||||    
T  25051198 aaaatatttaatagaaacactatattaatattgatattttgaaaatagttataagttttccaaattttatcatat 25051272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 25051331 - 25051440
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatca-aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 279  Q
    |||||| |||| ||| |||| | |||||||||| | |||||||||||||||| | || |||||||||||||| || |||||| | ||||||||||||||     
T  25051331 tgcaaacatttaacggtgttatacatataaaataacaaatatttaatagaaataatatattaatgttgatattttaaaaataatcatgagttttcaaaat 25051430  T
Q  280 tttctcatat 289  Q
    ||| ||||||    
T  25051431 tttatcatat 25051440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 25051038 - 25051112
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||| ||||||||| || ||||||  |||||| |||||||| ||||||||||||||||| ||| ||||||    
T  25051038 aaaatatttgatagaaacattacattaatactgatattttgaaaatcgttatgagttttcaaaattttatcatat 25051112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 37996767 - 37996671
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||| | | ||||||  ||||||||| |||||  |||||| | |||||||| |||||||||||||| || |||||||| ||||||||||||||    
T  37996767 aaatatttaatggtgttttaaatataaaatgaaaatttatttaacaaaaacactacattaatgttgatattttaaaaatagtcatgagttttcaaaa 37996671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 11132268 - 11132336
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 287  Q
    ||||||| ||||||||||  || |||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  11132268 tatttaaaagaaacactaccttgatgttgatattttgaaaatagtcatgagttttcaaaattttatcat 11132336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 32668835 - 32668898
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||| |||| ||||||||||| || ||||||||||| |  |||||||||||    
T  32668835 aaaatatttaatagaaaaactacattaatgttgaaattttgaaaatagtcaatagttttcaaaa 32668898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 13540541 - 13540460
Alignment:
Q  199 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||| |||||||||| ||||  |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||    
T  13540541 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaa 13540460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 19583368 - 19583457
Alignment:
Q  182 gcaaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    |||||||||||||| |||||| ||| |||||  | | |||| ||||||||||||| |||| ||| ||||| || |||||||||||||||||    
T  19583368 gcaaatatttgacggtgttttgcatgtaaaaagata-tattcaatagaaacactacattactgtcgatattttaaaaatagttatgagttt 19583457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 16177362 - 16177287
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagt 270  Q
    |||||| | |||||||||||||  ||||||||| |||||||| |||||||||  ||| ||||||||||| ||||||    
T  16177362 tgttttgcttataaaatcaaaaattatttaataaaaacactacattaatgtttttattttgaaaatagtcatgagt 16177287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 34852996 - 34853088
Alignment:
Q  197 tgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| |||||  |||||||||||||||||||||||| |||  || |||||| |||| || |||||| |||| ||| ||||||    
T  34852996 tgttttgcatataaaataaaaatttatttaatagaaacactaaattaattttg--attttgaaagtagtcataagtttttaaaattttatcatat 34853088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 13540766 - 13540673
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| |||   ||||||||||||||||||  ||||| || |||| ||||||||||| |||||||||||| | ||| ||||||    
T  13540766 tgttttgcatataaaataaaacgttatttaatagaaacactaccttaatttt-atattttgaaaatagtcatgagttttcaatattttatcatat 13540673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 13542074 - 13542003
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 287  Q
    ||||||||| |||||||| || |||||||||||||| || ||||||||||| || ||| |||| ||| ||||    
T  13542074 aaatatttattagaaacattatattaatgttgatatttttaaaatagttattaggttttaaaattttatcat 13542003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 19585334 - 19585384
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    |||| |||||||||| |||||||||||||| ||||||||||| || |||||    
T  19585334 ttaacagaaacactacattaatgttgatattttgaaaatagtcattagttt 19585384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 25447047 - 25446942
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttc 283  Q
    |||||||| ||| ||||||  ||||||  | ||||||||||||| | |||||| ||| |||||||||| || |||||| | ||||||||  |||| |||     
T  25447047 aaatatttaacggtgttttaaatataacttaaaaatatttaataaacacactatatttatgttgatattttaaaaataatcatgagtttctaaaatttta 25446948  T
Q  284 tcatat 289  Q
    ||||||    
T  25446947 tcatat 25446942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 10326111 - 10326159
Alignment:
Q  230 aacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||| ||||||||||||||||| || |||||||| | ||||||||||||    
T  10326111 aacattaaattaatgttgatatttttaaaatagtcaagagttttcaaaa 10326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 507
Target Start/End: Original strand, 53998433 - 53998465
Alignment:
Q  475 tctgtttaccatctcttgtgttgtttcttctct 507  Q
    |||||||||||||||| ||||||||||||||||    
T  53998433 tctgtttaccatctctggtgttgtttcttctct 53998465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 43761433 - 43761347
Alignment:
Q  205 atataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||| ||||  |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||  |||| ||| ||||||    
T  43761433 atataaaataaaaagttatttaatagaaacactacattgatgttgatattttgaaaatagttatgagtttctaaaattttatcatat 43761347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 3592626 - 3592699
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||| |||||||| ||||||||| |||| ||||||||||| | |||||||||||| ||| ||||||    
T  3592626 aaatatttaataaaaacactacattaatgttaatattttgaaaatagtcacgagttttcaaaattttatcatat 3592699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 34903612 - 34903708
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||| ||| ||||||  ||||||||| |||||  |||||||||| |||||| |||||||||||||| || ||||||| || |||||| |||||    
T  34903612 aaatatttaacggtgttttaaatataaaataaaaatttatttaatagacacactacattaatgttgatattttaaaaataggtaagagtttccaaaa 34903708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 39313144 - 39313088
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||| ||||||||||||    
T  39313144 ttaatagaaacactgcattaatcttgatattttgaaaatagttacgagttttcaaaa 39313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 3591774 - 3591840
Alignment:
Q  238 attaatgttgatatgttgaaaatagtt-atgagttttcaaaactttctcatatggatatatgaaaaa 303  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||||||||||| || |||| |||||    
T  3591774 attaacgttgatatcttgaaaatagtccatgagttttcaaaactttctcatattgaaatattaaaaa 3591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 11080645 - 11080707
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 277  Q
    ||||||||||| |||||||||  |||||||||||||  ||||||||||| |||| ||||||||    
T  11080645 aaaatatttaaaagaaacactgtattaatgttgataatttgaaaatagtgatgatttttcaaa 11080707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 15198750 - 15198843
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    ||||||||||  ||| |||||| |||||||||| ||||  |||||||||||||||||| ||||||||  |||| |||| |||| | ||||||||    
T  15198750 tgcaaatattgaacggtgttttgcatataaaataaaaagttatttaatagaaacactatattaatgtatatattttgacaatattaatgagttt 15198843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 16682169 - 16682063
Alignment:
Q  184 aaatatttgacgttgttttccatataaaat-caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaacttt 282  Q
    |||||||| ||| ||||||  |||| |||| |||||||||| |||||||||||| |||| |||  |||| ||||||||||| ||||  |||||||| |||    
T  16682169 aaatatttaacggtgttttgaatattaaatacaaaatatttgatagaaacactacattactgtacatattttgaaaatagtcatgaactttcaaaatttt 16682070  T
Q  283 ctcatat 289  Q
     ||||||    
T  16682069 atcatat 16682063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 15913373 - 15913300
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||| || ||||| |||||||||||||| |||||| || || |||||||| |||| ||| ||||||    
T  15913373 aaatatttaataaaatcactatattaatgttgatattttgaaagtaattttgagtttttaaaattttatcatat 15913300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 32035026 - 32034942
Alignment:
Q  205 atataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 287  Q
    ||||||||| ||||  |||||||||||| ||||| |||||| ||||||| || |||||||| | |||||||||||| ||| ||||    
T  32035026 atataaaatgaaaagttatttaatagaagcactacattaattttgatattttaaaaatagtcacgagttttcaaaattttatcat 32034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 16086967 - 16086900
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||||||   |  ||||||||||||||||||||| | ||| |||||||||| ||||||||    
T  16086967 ttaatagaaacactaccattgtgttgatatgttgaaaatagtcacgagctttcaaaactatctcatat 16086900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 39157547 - 39157598
Alignment:
Q  238 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| ||||||| |||||||||||||| ||||||||||| ||| ||||||    
T  39157547 attaattttgatattttgaaaatagttataagttttcaaaattttatcatat 39157598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 39313032 - 39312935
Alignment:
Q  185 aatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttg--atatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||| ||| ||||||  ||||||||| |||||  |||||||||| |||||| ||||||||||  || | ||||||||||| |||||||| |||||    
T  39313032 aatatttaacggtgttttaaatataaaataaaaatttatttaatagacacactacattaatgttgaaattttttgaaaatagtcatgagtttccaaaa 39312935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 15121826 - 15121887
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 277  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  15121826 aaaatatttaacagaaacactatattattgttgatat-ttgaaaaatgttacgagttttcaaa 15121887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 15146014 - 15146075
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 277  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  15146014 aaaatatttaacagaaacactatattattgttgatat-ttgaaaaatgttacgagttttcaaa 15146075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 46022945 - 46023015
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | |||||| || || ||| ||||||    
T  46022945 tatttaagagaaacactacattaatgttgataatttgaaaatagtcacgagtttccacaattttatcatat 46023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 3591906 - 3591970
Alignment:
Q  199 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaata 261  Q
    |||| |||||||||| ||||  |||||||||||||||| | |||||||||||||| || ||||||    
T  3591906 ttttgcatataaaatgaaaaattatttaatagaaacacaacattaatgttgatatcttaaaaata 3591970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 48994950 - 48994897
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | ||||||    
T  48994950 tatttaagagaaacactacattaatgttgataatttgaaaatagtcacgagttt 48994897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 15114838 - 15114933
Alignment:
Q  196 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||| |||||||||| ||||  |||||| ||||||||||| | | ||||| | || |||||||||||  ||||||||||| | ||| ||||||    
T  15114838 ttgttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatat 15114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 15123048 - 15123143
Alignment:
Q  196 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||| |||||||||| || |  |||||| ||||||||||| | | ||||| | || ||||||||||| |||||||||||| | ||| ||||||    
T  15123048 ttgttttgcatataaaataaacagttatttattagaaacactacaatgatgtttacatcttgaaaatagtcatgagttttcaataatttatcatat 15123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 15139354 - 15139449
Alignment:
Q  196 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||| |||||||||| ||||  |||||| ||||||||||| | | ||||| | || |||||||||||  ||||||||||| | ||| ||||||    
T  15139354 ttgttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatat 15139449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 15147236 - 15147331
Alignment:
Q  196 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||| |||||||||| || |  |||||| ||||||||||| | | ||||| | || ||||||||||| |||||||||||| | ||| ||||||    
T  15147236 ttgttttgcatataaaataaacagttatttattagaaacactacaatgatgtttacatcttgaaaatagtcatgagttttcaataatttatcatat 15147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 31795038 - 31794944
Alignment:
Q  185 aatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||| ||| |||||| |||||||||| |||| ||||||||| || ||||| |||||||||||||| ||||||||||| | ||||||| ||||    
T  31795038 aatatttaacggtgttttacatataaaataaaaaatatttaataaaagcactacattaatgttgatatattgaaaatagtcacgagtttttaaaa 31794944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 11959934 - 11959866
Alignment:
Q  221 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||||||| |||||||||||||| || |||||| | |||||||||||||| ||| ||||||    
T  11959934 tttaatagaaacactacattaatgttgatattttaaaaataataatgagttttcaaaaatttatcatat 11959866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 5089615 - 5089705
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    |||||||  ||| |||||| |||||||| | ||||  |||||||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  5089615 aaatattgaacggtgttttgcatataaagtaaaaagttatttaatagaaacactacattaatgttgatattttgaaaataatcatgagttt 5089705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 302
Target Start/End: Complemental strand, 11854295 - 11854208
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaa 302  Q
    ||||||||||| |||||||||| ||||| |||||| | || |||||| | |||||||||||||| ||| |||||| |||| |||||||    
T  11854295 aaaatatttaacagaaacactacattaaagttgatcttttaaaaataataatgagttttcaaaattttatcatatcgatacatgaaaa 11854208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 15555445 - 15555501
Alignment:
Q  205 atataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaata 261  Q
    ||||||||| |||  ||||||||||||||||| |||||||||||||| |||||||||    
T  15555445 atataaaataaaataatttaatagaaacactatattaatgttgatattttgaaaata 15555501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 2999472 - 2999539
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| |||| |||| |||| ||| ||||||    
T  2999472 ttaatagaaacactacattgatgttgatattttgaaaatagtcatgactttttaaaattttatcatat 2999539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 15554430 - 15554493
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||  | ||||||||| ||||    
T  15554430 aaaatatttaatagaaatactatattaatgttgatattttgaaaatgatcatgagtttttaaaa 15554493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 15556434 - 15556547
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttc 283  Q
    |||||||| ||| | |||| | |||||||| |||| ||||   ||||| |||| ||||||||||||||||| |||| | | ||||||||| |||| |||     
T  15556434 aaatatttaacggtattttacttataaaataaaaaaatttctcagaaaaactacattaatgttgatatgttaaaaacaatcatgagttttaaaaaattta 15556533  T
Q  284 tcatatggatatat 297  Q
    |||||| |||||||    
T  15556534 tcatatcgatatat 15556547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 15554776 - 15554836
Alignment:
Q  224 aatagaaacactaaattaatgttgatatgtt-gaaaatagttatgagttttcaaaactttc 283  Q
    ||||||||||||| |||||||||||||||||  |||||| | |||| ||||||||||||||    
T  15554776 aatagaaacactacattaatgttgatatgttaaaaaataataatgacttttcaaaactttc 15554836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 15555126 - 15555174
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 263  Q
    |||||| |||||| |||||||| |||||||||||||| |||||||||||    
T  15555126 aaaatacttaataaaaacactacattaatgttgatattttgaaaatagt 15555174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 31794860 - 31794770
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatca---aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 268  Q
    |||||||| || ||||||||||||||||||||| |   ||| | ||||| ||||||||| |||||||| ||||| ||||| ||||| ||||    
T  31794860 tgcaaatagttaacgttgttttccatataaaataaaataaaaaattaattgaaacactacattaatgtcgatattttgaatatagtcatga 31794770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 15555933 - 15555988
Alignment:
Q  221 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 276  Q
    |||||||||||||||| |||| ||||||||| || |||||||||| ||||| ||||    
T  15555933 tttaatagaaacactacattagtgttgatattttcaaaatagttacgagttctcaa 15555988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 15556292 - 15556338
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 268  Q
    ||||||||||||| | |||||||||||||| ||||||||||| ||||    
T  15556292 ttaatagaaacacaacattaatgttgatattttgaaaatagtcatga 15556338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 15558795 - 15558868
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||| || ||||||||||||||||||||||| || |||| ||| |||| ||||| ||| ||| ||||||    
T  15558795 aaaatattta-tataaacactaaattaatgttgatattttaaaaacagtcatgaattttctaaattttatcatat 15558868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 4979870 - 4979964
Alignment:
Q  183 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||| |||| |||||  ||||||||| |||| ||||||||| ||| | || |||||||| ||||| ||||||||||| | ||||||||||||    
T  4979870 caaatatttaacgt-gttttgtatataaaataaaaaatatttaataaaaaaa-tacattaatgtcgatattttgaaaatagtcacgagttttcaaaa 4979964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 7566188 - 7566121
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||||||||| |||||| ||   || ||||||||||| ||||||||| |||| ||| ||||||    
T  7566188 tatttaatagaaacactacattaatttt---attttgaaaatagtcatgagtttttaaaattttatcatat 7566121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 31480956 - 31481039
Alignment:
Q  197 tgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| ||||||||||  |||| ||||||||||||||| || || ||| || |||| | ||||||||| | ||||||||||||    
T  31480956 tgttttgcatataaaataacaaagtatttaatagaaacattacatcaatattaatatttagaaaatagtaacgagttttcaaaa 31481039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 40373650 - 40373700
Alignment:
Q  239 ttaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  40373650 ttaatgttgatatgttgaaaatagtcataagttttcaaaactttctcatat 40373700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 41912815 - 41912904
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 268  Q
    ||||||||||| ||| |||||| ||||||||||  ||| ||||||| || |||||||| |||||||||||||| ||||||||||| ||||    
T  41912815 tgcaaatatttaacggtgttttgcatataaaatgacaacatatttattaaaaacactatattaatgttgatattttgaaaatagtcatga 41912904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 26657521 - 26657605
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagtt 264  Q
    ||||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||    
T  26657521 tgcaaatatttaacggtgttttaaatataaaataaaaattatttaatagaaacactacatgaatgttgatattctgaaaatagtt 26657605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 26929109 - 26929193
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagtt 264  Q
    ||||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||    
T  26929109 tgcaaatatttaacggtgttttaaatataaaataaaaattatttaatagaaacactacatgaatgttgatattctgaaaatagtt 26929193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 3419995 - 3420091
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaa-atcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 276  Q
    ||||||||||| ||| |||||| |||| ||| | |||||||||||||| ||||| || | |||||||||||| ||||||||||| || | |||||||    
T  3419995 tgcaaatatttaacggtgttttgcatacaaataacaaaatatttaatacaaacattatactaatgttgatattttgaaaatagtcataaattttcaa 3420091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 17762113 - 17762180
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||| || | |||||||||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  17762113 ttaatagaaagacaacattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatat 17762180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 1832902 - 1832982
Alignment:
Q  197 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  1832902 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 1832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 37447803 - 37447741
Alignment:
Q  227 agaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||| |||||||||||||| |||||||| || |||||| ||||||| ||| ||||||    
T  37447803 agaaacactacattaatgttgatattttgaaaatggtcatgagtgttcaaaattttatcatat 37447741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 40318368 - 40318448
Alignment:
Q  197 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  40318368 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 40318448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 41409172 - 41409092
Alignment:
Q  197 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  41409172 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 41409092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 17762794 - 17762875
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||| | ||||||||||||||    
T  17762794 tgttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatactcatgagttttcaaaa 17762875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 41912704 - 41912768
Alignment:
Q  238 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaa 303  Q
    ||||||||| |||||||||||||||| |  |||||||||||||||||||||| |||| || |||||    
T  41912704 attaatgtt-atatgttgaaaatagtcacaagttttcaaaactttctcatatcgatacattaaaaa 41912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 17694034 - 17694106
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcata 288  Q
    ||||||||||||| ||||||| | |||||||||||| || |||||| ||| ||||||| |||| ||| |||||    
T  17694034 aaatatttaatagcaacactatactaatgttgatattttaaaaataattacgagtttttaaaattttatcata 17694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 22554745 - 22554820
Alignment:
Q  205 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||| |||||  |||||||||| |||||| |||||||||||||| || |||||||| | |||||| |||||    
T  22554745 atataaaataaaaatttatttaatagacacactacattaatgttgatattttaaaaatagtcacgagtttccaaaa 22554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 12048810 - 12048740
Alignment:
Q  183 caaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatat 251  Q
    ||||||||| ||| ||||||  ||||||||| ||||  |||||||||||||||||| ||| ||||||||||    
T  12048810 caaatatttaacggtgttttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatat 12048740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 21118353 - 21118412
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| | || |||||| ||||    
T  21118353 tatttaatagaaacattaaattaattttgatattttgaaaataatcattagttttaaaaa 21118412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 54194 - 54248
Alignment:
Q  220 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttc 274  Q
    ||||||||||||||||||||||||||| |||| || ||||||  ||| |||||||    
T  54194 atttaatagaaacactaaattaatgttaatattttaaaaatatctataagttttc 54248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 17694197 - 17694253
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatat 251  Q
    |||||| |||||||||| ||||  ||||||||| |||||||| ||||||||||||||    
T  17694197 tgttttacatataaaataaaaaaatatttaatataaacactacattaatgttgatat 17694253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 21117522 - 21117630
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||||||  || ||||||  ||||||||| |||   |||||||| |||| |||| ||| |||||||||| |||||||||||  |||||||| ||||    
T  21117522 tgcaaatatttatcggtgttttaaatataaaataaaatgttatttaattgaaatactacattgatgttgatattttgaaaatagtcgtgagtttttaaaa 21117621  T
Q  279 ctttctcat 287  Q
     ||| ||||    
T  21117622 ttttatcat 21117630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 22554269 - 22554306
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaa 259  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  22554269 ttaatagaaacactacattaatgttgatattttgaaaa 22554306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 3419811 - 3419886
Alignment:
Q  204 catataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 277  Q
    |||||||||| ||||  ||||||||||||||| |  |||||| ||||||| || |||||||| |||| ||||||||    
T  3419811 catataaaataaaaagctatttaatagaaacattgcattaatattgatattttaaaaatagtcatgaattttcaaa 3419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 22555121 - 22555165
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagt 263  Q
    ||||||||||| |||||| |||||||||||||| || ||||||||    
T  22555121 tatttaatagacacactacattaatgttgatattttaaaaatagt 22555165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 507
Target Start/End: Original strand, 25701032 - 25701064
Alignment:
Q  475 tctgtttaccatctcttgtgttgtttcttctct 507  Q
    |||||||||||||||| ||||||||||||||||    
T  25701032 tctgtttaccatctctggtgttgtttcttctct 25701064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 40373794 - 40373866
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 287  Q
    ||||||||||||| |||| | | |||||| ||||||| |||||||||   | |||||||||||||||| ||||    
T  40373794 aaaatatttaatataaactcgacattaattttgatattttgaaaataacgacgagttttcaaaactttatcat 40373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 1102398 - 1102328
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||  |||| ||| ||||||    
T  1102398 tatttaatagacacactacattaatgttgatattttgaaaatagttatgagtttctaaaattttatcatat 1102328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 3142558 - 3142476
Alignment:
Q  238 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttcatatata 320  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||| || |||| || |||||||| |||  ||||||||    
T  3142558 attaacgttgatatgttgaaaatagtcatgagttttcaaaacattctcagatcgatacataaaaaattgcttccccatatata 3142476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 30081519 - 30081626
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 281  Q
    |||||||| ||| ||||||  ||||||||| ||||  ||||||||| |||||| | |||||||||||||| || |||||||| |||||||| ||||| ||    
T  30081519 aaatatttaacggtgttttaaatataaaataaaaagttatttaatataaacacgacattaatgttgatattttcaaaatagtcatgagtttccaaaattt 30081618  T
Q  282 tctcatat 289  Q
    | ||||||    
T  30081619 tatcatat 30081626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 7165500 - 7165562
Alignment:
Q  218 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaact 280  Q
    ||||||||||||||||||| |||||||| |||||  | ||||||||||| |||||||||||||    
T  7165500 atatttaatagaaacactacattaatgtagatattataaaaatagttattagttttcaaaact 7165562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 8494310 - 8494242
Alignment:
Q  221 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||| |||| ||||||||| |||| || ||||||||||| ||||||| ||||||| ||||||    
T  8494310 tttaatagaaatactacattaatgtttatattttaaaaatagttattagttttcgaaactttatcatat 8494242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 20126269 - 20126209
Alignment:
Q  218 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||| |||| |||| ||||    
T  20126269 atatttaatagaaacactacattgatgttgatattttgaaaatagtcatgaatttttaaaa 20126209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 4145067 - 4144981
Alignment:
Q  205 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||| |||| ||||||||| | ||||||||||| || ||| ||||||    
T  4145067 atataaaataaaaatttattcaatagaaacactatattaatgtttatattttgaaaatattaatgagttttcacaattttatcatat 4144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 31720941 - 31720862
Alignment:
Q  199 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||||| ||||||||||||||    
T  31720941 ttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatagtgatgagttttcaaaa 31720862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 37834538 - 37834445
Alignment:
Q  197 tgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| || ||||||| |||||  |||||||||||| |||| |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||    
T  37834538 tgttttgcaaataaaataaaaatttatttaatagaaaaactacattaattttgatat-ttgaaaatagtcttgagttttcaaaattttatcatat 37834445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 4161026 - 4160961
Alignment:
Q  224 aatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||| ||||||||| |||| ||||||||| | ||||||||||| || ||| ||||||    
T  4161026 aatagaaacactatattaatgtttatattttgaaaatattaatgagttttcacaattttatcatat 4160961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 495262 - 495180
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaata 261  Q
    ||||||||||| ||| | ||||  ||||||||| ||||  |||||||||||||||||| ||| ||||||||||  ||||||||    
T  495262 tgcaaatatttaacggtattttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatattctgaaaata 495180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 4161232 - 4161146
Alignment:
Q  205 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||| || | ||||||||| | ||||||||||| || ||| ||||||    
T  4161232 atataaaataaaaatttattcaatagaaacactatattaatgtttatcttttgaaaatattaatgagttttcacaattttatcatat 4161146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 12946607 - 12946498
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||| | | ||||||| ||||||||| ||||  ||||||||||||| |||| | |||| ||||||| ||||||||| | ||| ||||| ||||    
T  12946607 tgcaaatatttaaaggtgttttc-atataaaattaaaacttatttaatagaaatactacaataattttgatattttgaaaataataatgtgtttttaaaa 12946509  T
Q  279 ctttctcatat 289  Q
     ||| ||||||    
T  12946508 ttttatcatat 12946498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 13698423 - 13698497
Alignment:
Q  205 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 277  Q
    ||||||||| |||||  |||||||||| | || | |||||||||||||| |||||||| || |||||||||||||    
T  13698423 atataaaatgaaaattaatttaatagacaaacaacattaatgttgatattttgaaaattgtcatgagttttcaaa 13698497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 27532317 - 27532376
Alignment:
Q  231 acactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatg 290  Q
    |||||| |||||||||||||| || |||||| | |||||||||||||| ||| |||||||    
T  27532317 acactatattaatgttgatattttaaaaataatcatgagttttcaaaattttatcatatg 27532376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 494722 - 494645
Alignment:
Q  197 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    |||||| |||||||||| ||||  |||| ||||||||||||| ||||||||| |||| |||| |||| | ||||||||    
T  494722 tgttttgcatataaaataaaaagttattcaatagaaacactatattaatgtttatattttgacaatattaatgagttt 494645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 20105992 - 20106083
Alignment:
Q  197 tgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||| |||||||||| ||||| ||||||||  |||||| | ||||||||||||| ||| ||||||| || ||||||||||| ||| ||||||    
T  20105992 tgtttttcatataaaataaaaattatttaataagaacactta-ttaatgttgatattttg-aaatagtcataagttttcaaaattttatcatat 20106083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 20126467 - 20126414
Alignment:
Q  204 catataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaa 257  Q
    |||||||||| ||||||||||||| |||||||| ||| |||| ||||| |||||    
T  20126467 catataaaataaaaatatttaataaaaacactacattgatgtcgatattttgaa 20126414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 3142234 - 3142158
Alignment:
Q  214 caaaatatttaatagaaacactaaattaatg-ttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||||||  ||| |||||   ||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  3142234 caaaatatttaatagaaatgctacattaaacattgatattttgaaaatagtcacgagttttcaaaattttatcatat 3142158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 3142412 - 3142380
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttg 247  Q
    |||||||||||||||||||||| ||||||||||    
T  3142412 aaaatatttaatagaaacactacattaatgttg 3142380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 25810419 - 25810475
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||||||| |  |||||||||||||| ||||||||||| | ||||||| ||||    
T  25810419 ttaatagaaacattgcattaatgttgatattttgaaaatagtaacgagtttttaaaa 25810475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 34913708 - 34913635
Alignment:
Q  216 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||  || ||||| |||| ||| ||||||    
T  34913708 aaatatttaatagaaacaataaattaatgttgatattttgtaaatagtcttgggtttttaaaattttatcatat 34913635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 25699301 - 25699345
Alignment:
Q  207 ataaaatcaaaatatttaatagaaacactaaattaatgttgatat 251  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  25699301 ataaaataaaaatatttaatagaaacactatattaatgttgatat 25699345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 13004036 - 13004108
Alignment:
Q  215 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    ||||||||||||||||||| || ||||||  ||||||| |||||||| ||||||||||| |||| ||| ||||||    
T  13004036 aaaatatttaatagaaacattatattaat--tgatatgctgaaaatacttatgagtttttaaaattttatcatat 13004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 42499089 - 42498982
Alignment:
Q  183 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 281  Q
    ||||||||| ||| | ||||  ||||||||| |||| |||||||||||| || || ||||||| |||||| ||||||||||||| || |||| |||| ||    
T  42499089 caaatattttacgatattttgtatataaaataaaaaatatttaatagaatcattatattaatgatgatattttgaaaatagttacgaatttttaaaattt 42498990  T
Q  282 tctcatat 289  Q
    | ||||||    
T  42498989 tatcatat 42498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 36648177 - 36648068
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaa-aatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 279  Q
    ||||||||||  ||| |||||| ||| |||||| |  |||||||||||||||  ||| |||||||||||||| |||||||||||  | |||||| ||||     
T  36648177 tgcaaatattcaacggtgttttgcatgtaaaataaggaatatttaatagaaattctatattaatgttgatattttgaaaatagtcgtaagtttttaaaat 36648078  T
Q  280 tttctcatat 289  Q
    ||| ||||||    
T  36648077 tttatcatat 36648068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 6128176 - 6128112
Alignment:
Q  209 aaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagtttt 273  Q
    |||| |||||||||||||| |||||||| | | |||||||| | ||||||||||| |||||||||    
T  6128176 aaaaacaaaatatttaataaaaacactacactgatgttgatgttttgaaaatagtcatgagtttt 6128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 25699650 - 25699748
Alignment:
Q  222 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttcatatata 320  Q
    ||||||||||||||| ||||||| ||  ||| | |||||||| || |||||| |||| ||| |||||| |||| || |||||||| |||| || |||||    
T  25699650 ttaatagaaacactacattaatgatggcatgataaaaatagtcataagtttttaaaattttatcatatcgatacataaaaaattgcttctccagatata 25699748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 34913835 - 34913778
Alignment:
Q  221 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||| ||| ||||||||| |||||||  ||||||||||| ||||| |||||||    
T  34913835 tttaatagagacattaaattaatattgatattctgaaaatagttgtgagtgttcaaaa 34913778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 25721726 - 25721833
Alignment:
Q  184 aaatatttgacgttgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 281  Q
    |||||| | ||| |||||| ||||| ||||  |||||||||||||  |||| ||  |||||||||||||| ||||||||||| || | ||||||| | ||    
T  25721726 aaatatataacggtgttttacatatgaaataacaaaatatttaatgtaaactcttcattaatgttgatattttgaaaatagtaatcaattttcaacattt 25721825  T
Q  282 tctcatat 289  Q
    | ||||||    
T  25721826 tatcatat 25721833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 36647515 - 36647432
Alignment:
Q  197 tgttttccatataaaatcaaaatattt--aatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||| |||||||||| ||||||| |  ||||||||||  | ||||||||| |||| | |||||||||||| |||||| ||||    
T  36647515 tgttttgcatataaaataaaaatatattaaatagaaacatgacattaatgtttatatttcgaaaatagttataagttttaaaaa 36647432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 36647990 - 36647938
Alignment:
Q  238 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatg 290  Q
    |||||||||||||| |||||||||||| | | ||||||||| ||| |||||||    
T  36647990 attaatgttgatattttgaaaatagttgttaattttcaaaattttatcatatg 36647938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 584 - 654
Alignment:
Q  204 catataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 272  Q
    |||||||||| ||||  |||||||||||||||||| ||||||||| |||| ||||||||||| || |||||    
T  584 catataaaataaaaagttatttaatagaaacactacattaatgtttatattttgaaaatagtcattagttt 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 251 - 320
Alignment:
Q  219 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 289  Q
    |||||||||||||||||| ||||||||||| |  ||||||||||| | |||||||||||| ||| ||||||    
T  251 tatttaatagaaacactatattaatgttga-agtttgaaaatagtcacgagttttcaaaattttatcatat 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 406 - 466
Alignment:
Q  205 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagt 263  Q
    ||||||||| |||||  ||| |||||| |||||| |||||||||||||| |||||||||||    
T  406 atataaaataaaaatttattcaatagacacactacattaatgttgatattttgaaaatagt 466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 77534 - 77439
Alignment:
Q  184 aaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    |||||||| ||  |||||| |||||||||| |||| ||||||||| ||||| || |||||||||||||| || ||| |||| ||||||||| ||||    
T  77534 aaatattttacaatgttttgcatataaaataaaaaatatttaataaaaacattacattaatgttgatattttaaaagtagtcatgagtttttaaaa 77439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 1231 - 1121
Alignment:
Q  181 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||||| ||| | ||||  ||||||||| ||||  |||||||||||||||||| ||||| || ||||| |||||||   | |||||||||||| |    
T  1231 tgcaaatatttaacgatatttttaatataaaataaaaacttatttaatagaaacactagattaaggtagatattttgaaaacgatcatgagttttcaata 1132  T
Q  279 ctttctcatat 289  Q
     ||| ||||||    
T  1131 ttttatcatat 1121  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 51256 - 51160
Alignment:
Q  183 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 278  Q
    ||||||||| |||  ||||| |||||||||| |||| || |||||| ||  |||| ||||||||| |||| || |||||||||||| ||||| ||||    
T  51256 caaatatttaacggcgttttacatataaaataaaaaataattaataaaactactacattaatgttaatattttaaaaatagttatgggtttttaaaa 51160  T

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