View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14395_low_13 (Length: 506)

Name: NF14395_low_13
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14395_low_13
NF14395_low_13
[»] chr6 (5 HSPs)
chr6 (1-143)||(6175491-6175634)
chr6 (406-490)||(6175319-6175403)
chr6 (12-98)||(6176288-6176374)
chr6 (5-84)||(6172565-6172644)
chr6 (178-228)||(6175405-6175456)
[»] chr3 (1 HSPs)
chr3 (31-63)||(30522305-30522337)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 6175634 - 6175491
Alignment:
Q  1 aaccacaaatctgaacaaaacaatcaaaagaagttaaaataatcataagaatagaaaatcagatgggttaagtggctcatatcacttgtaaatttag-aa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||    
T  6175634 aaccacaaatctgaacaaaacaatcaaaagaagttaaaataatcataagaatagaaaatcagatgggttaagtggctcatagtacttgtaaatttagaaa 6175535  T
Q  100 gatctatgattgtagaaaaaacccgatttactttgaaggagtgt 143  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||    
T  6175534 gatctatgattgtaggaaaaacccaattcactttgaaggagtgt 6175491  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 6175403 - 6175319
Alignment:
Q  406 tatactctacgcttaagttctgcttcataaaaaggtcaaactcaatttcgaaaattagttacgaagaagtggagaaagtgataaa 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6175403 tatactctacgcttaagttctgcttcataaaaaggtcaaactcaatttcgaaaattagttatgaagaagtggagaaagtgataaa 6175319  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 6176374 - 6176288
Alignment:
Q  12 tgaacaaaacaatcaaaagaagttaaaataatcataagaatagaaaatcagatgggttaagtggctcatatcacttgtaaatttaga 98  Q
    |||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||    
T  6176374 tgaacaaaacaatccaaataagttaaagtaatcataagaatagaaaatcatatgggttaaggggatcatatcaattgtaaatttaga 6176288  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 6172644 - 6172565
Alignment:
Q  5 acaaatctgaacaaaacaatcaaaagaagttaaaataatcataagaatagaaaatcagatgggttaagtggctcatatca 84  Q
    ||||||| ||||||||| ||| ||  |||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  6172644 acaaatccgaacaaaaccatccaattaagttaaaataatcataagattagaaaatcagatgggttaagaggctcatatca 6172565  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 6175456 - 6175405
Alignment:
Q  178 ccgaaactgagatatcaaacaaa-gttagcaccttcaattgatggaagttag 228  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  6175456 ccgaaactgagatatcaaacaaaagttagcactttcaattgatggaagttag 6175405  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 30522337 - 30522305
Alignment:
Q  31 aagttaaaataatcataagaatagaaaatcaga 63  Q
    |||||||||||||||||| ||||||||||||||    
T  30522337 aagttaaaataatcataaaaatagaaaatcaga 30522305  T

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