View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14395_low_14 (Length: 490)

Name: NF14395_low_14
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14395_low_14
NF14395_low_14
[»] chr6 (2 HSPs)
chr6 (156-288)||(10099032-10099164)
chr6 (168-276)||(4890698-4890806)
[»] chr5 (2 HSPs)
chr5 (292-442)||(23259397-23259543)
chr5 (156-264)||(41842459-41842567)
[»] chr3 (1 HSPs)
chr3 (88-272)||(9260692-9260876)
[»] chr8 (2 HSPs)
chr8 (85-288)||(23585273-23585476)
chr8 (43-78)||(23585499-23585534)
[»] chr4 (3 HSPs)
chr4 (97-288)||(35781850-35782040)
chr4 (156-244)||(14135775-14135863)
chr4 (43-76)||(35781783-35781816)
[»] chr1 (3 HSPs)
chr1 (86-288)||(30951329-30951531)
chr1 (44-78)||(30951555-30951589)
chr1 (159-226)||(12469857-12469929)
[»] chr2 (5 HSPs)
chr2 (85-235)||(39266085-39266235)
chr2 (156-275)||(33912284-33912403)
chr2 (156-237)||(1344498-1344579)
chr2 (156-244)||(15262927-15263015)
chr2 (43-78)||(1344660-1344695)
[»] scaffold0667 (1 HSPs)
scaffold0667 (87-235)||(591-739)
[»] chr7 (1 HSPs)
chr7 (156-207)||(33819812-33819863)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 10099164 - 10099032
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaa 255  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||||||| | ||||||||||||||| | ||||||| |||| ||||    
T  10099164 aaatacaaaggagtgataagatatgataagtaaatggaataatttatcctatctcattgttgcaccaaacagaagattgagatatgataggatatgctaa 10099065  T
Q  256 tcatatcctgtctctctatccagcgcatcaaac 288  Q
    ||||||||||||||||||||| ||||| |||||    
T  10099064 tcatatcctgtctctctatcctgcgcaccaaac 10099032  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 4890698 - 4890806
Alignment:
Q  168 gtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaatcatatcctgtc 267  Q
    ||||||||||| |||||||| ||||||||||||||   || | ||| ||| | ||||||||||||||||| | ||||  ||||| |||||||||||||||    
T  4890698 gtgataggatatgataagtagaaggaataatttatgtcatcttattattgcaccaaacagaagattgaaataggatatgatatattaatcatatcctgtc 4890797  T
Q  268 tctctatcc 276  Q
    | |||||||    
T  4890798 tttctatcc 4890806  T

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Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 292 - 442
Target Start/End: Complemental strand, 23259543 - 23259397
Alignment:
Q  292 aatatctacaaaatgaaattttcactttggtgtgtatatggagggtatcctttcacttaatttaagaaacagtgaaatacgtttattcaacnnnnnnnnn 391  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||              
T  23259543 aatatcttcaaaatgaagttttcactttggtgtgtatatggagggtatcctttcacttaattcaagaaacagtaaaatacgtttattaaa-----aaaaa 23259449  T
Q  392 nnnncagtaaaatacgtaggagtttgtatagaa-tttgtatttagggacaac 442  Q
        |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  23259448 aagacagtaaaatacgtaggagtttgtacagaattttgtatttagggacaac 23259397  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 41842459 - 41842567
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaa 255  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||| ||| ||||| | ||||||||||||||||| | ||||  ||||| |||    
T  41842459 aaatacaaaggagtgataggatagtataagtaaaaggaataatttattatatctcactgttgcaccaaacagaagattgaaataggatatgatatattaa 41842558  T
Q  256 tcatatcct 264  Q
    |||||||||    
T  41842559 tcatatcct 41842567  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 272
Target Start/End: Original strand, 9260692 - 9260876
Alignment:
Q  88 ggtaaaataaagattcattttgccaaaccgaatatgttaattttaacatagccaatatttaggatgagaaatacaaaggagtgataggataagataagta 187  Q
    |||||||||| |||| ||| |  |||| || ||||||||||||||||| |||| | | |||||||   |||||||||  |||||||||||| ||||||||    
T  9260692 ggtaaaataaggatttattctatcaaatcggatatgttaattttaacacagcctaaacttaggatagaaaatacaaaaaagtgataggatatgataagta 9260791  T
Q  188 aaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaatcatatcctgtctctct 272  Q
    ||| |||||||||||||||| ||||||||| | |||| |||||||||||| |  |||  |||||||||||||||| |||||||||    
T  9260792 aaatgaataatttatcatatctcattgttgcaccaaaaagaagattgaaatagtatatgatatactaatcatatcatgtctctct 9260876  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 23585476 - 23585273
Alignment:
Q  85 gagggtaaaataaagattcattttgccaaaccgaatatgttaattttaacatagccaatatttaggatgagaaatacaaaggagtgataggataagataa 184  Q
    ||||||||||||   ||| ||||||||||| || ||| ||||||||||||  | || | | |||||||   ||||||||  ||||||||||||| |||||    
T  23585476 gagggtaaaatatgaatttattttgccaaatcggataggttaattttaacccaacctaaacttaggatagaaaatacaactgagtgataggataggataa 23585377  T
Q  185 gtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaatcatatcctgtctctctatccagcgcatc 284  Q
    ||||||| ||||||||||| ||| ||||||||||| ||||||||| ||||  | | |||| |||||  |||||||||| ||||||||||||| ||||| |    
T  23585376 gtaaaagtaataatttatcctatctcattgttgtaccaaacagaaaattgtgataggatataatatgttaatcatatcttgtctctctatcctgcgcacc 23585277  T
Q  285 aaac 288  Q
    ||||    
T  23585276 aaac 23585273  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 23585534 - 23585499
Alignment:
Q  43 gaggaagaagaagatgataggaatggatgaatgatt 78  Q
    |||||||||||||||||||||||||||| |||||||    
T  23585534 gaggaagaagaagatgataggaatggataaatgatt 23585499  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 35781850 - 35782040
Alignment:
Q  97 aagattcattttgccaaaccgaatatgttaattttaacatagccaatatttaggatgagaaatacaaaggagtgataggataagataagtaaaaggaata 196  Q
    |||||||||||||| | | || ||| ||||||||||||  | || | |||||||||   |||||||||||||||||| ||||| |||||||||| |||||    
T  35781850 aagattcattttgc-atatcggataggttaattttaacccaacctaaatttaggatagaaaatacaaaggagtgataagataaaataagtaaaatgaata 35781948  T
Q  197 atttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaatcatatcctgtctctctatccagcgcatcaaac 288  Q
    ||||||| ||| ||||||||| | |||| |||||||||||| | ||||  |||||||||| ||||| ||| ||||||||| ||||| |||||    
T  35781949 atttatcctatctcattgttgcaccaaagagaagattgaaataggatatgatatactaattatatcatgtttctctatcctgcgcaccaaac 35782040  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 14135775 - 14135863
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgata 244  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |||| || | |||||| | |||| ||||| ||||    
T  14135775 aaatacaaaggagtgataggatatgataagttaaaggaataatttatcatattttattggtgcatcaaacaaaggattaaaacaagata 14135863  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 35781783 - 35781816
Alignment:
Q  43 gaggaagaagaagatgataggaatggatgaatga 76  Q
    |||||||||||||||||||||||||||| |||||    
T  35781783 gaggaagaagaagatgataggaatggataaatga 35781816  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 30951531 - 30951329
Alignment:
Q  86 agggtaaaataaagattcattttgccaaaccgaatatgttaattttaacatagccaatatttaggatgagaaatacaaaggagtgataggataagataag 185  Q
    ||||| |||||| | || |||||| |||| || ||| |||||||||||| || |  | | |||||||   ||||||||||||| ||||| ||| ||||||    
T  30951531 agggtgaaataagggtttattttgtcaaatcggataggttaattttaacctaacttaaacttaggatagaaaatacaaaggagcgatagcatatgataag 30951432  T
Q  186 taaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaatcatatcctgtctctctatccagcgcatca 285  Q
    |||||||||||||||||| ||| ||||| ||| | ||||||||||||| | | | ||||| |||| ||||||||||| ||||||||||||| ||||| ||    
T  30951431 taaaaggaataatttatcctatctcattattgcaccaaacagaagattaagataggataggatatgctaatcatatcttgtctctctatcctgcgcacca 30951332  T
Q  286 aac 288  Q
    |||    
T  30951331 aac 30951329  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 30951589 - 30951555
Alignment:
Q  44 aggaagaagaagatgataggaatggatgaatgatt 78  Q
    |||| ||||||||||||||||||||||||||||||    
T  30951589 aggaggaagaagatgataggaatggatgaatgatt 30951555  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 12469929 - 12469857
Alignment:
Q  159 tacaaaggagtgataggataa-----gataagtaaaaggaataatttatcatatatcattgttgtagcaaaca 226  Q
    |||||||||||||||||||||     ||||| |||||||||||| ||||||||| | |||| |||| ||||||    
T  12469929 tacaaaggagtgataggataaaataggataaataaaaggaataacttatcatattttattgatgtatcaaaca 12469857  T

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Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 39266235 - 39266085
Alignment:
Q  85 gagggtaaaataaagattcattttgccaaaccgaatatgttaattttaacatagccaatatttaggatgagaaatacaaaggagtgataggataagataa 184  Q
    ||||||||||||| |||| |||||| |||||  |||| ||||||||||||  |||  | | |||||||   |||| ||||||||||||| ||||||||||    
T  39266235 gagggtaaaataatgatttattttgtcaaactaaataggttaattttaacccagcttaaacttaggatagaaaatgcaaaggagtgataagataagataa 39266136  T
Q  185 gtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattga 235  Q
    ||||||||||||||||||| ||| |||||| || | |||||||||||||||    
T  39266135 gtaaaaggaataatttatcttatctcattgctgcaccaaacagaagattga 39266085  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 33912284 - 33912403
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgatagaatatactaa 255  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||| ||||||||| |||   | | ||||| |||| | ||    
T  33912284 aaatagaaaggagtgattggataagataaataaaaggaataatttatcatatctcatcgttgtaccaaacagaaaattaggataggataggatatgccaa 33912383  T
Q  256 tcatatcctgtctctctatc 275  Q
    ||||||| | ||||||||||    
T  33912384 tcatatcttatctctctatc 33912403  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 1344579 - 1344498
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaa 237  Q
    ||||||||||| ||||||||||| |||| ||||||||||| ||||||| ||| ||||||||| | |||| ||||||||||||    
T  1344579 aaatacaaaggcgtgataggataggataggtaaaaggaatgatttatcctatctcattgttgcaccaaatagaagattgaaa 1344498  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 15262927 - 15263015
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatatatcattgttgtagcaaacagaagattgaaacatgata 244  Q
    |||||||||||||||||||||||  ||| ||||||| |||||||||||||||   |||| || | |||||| |||||| ||||| ||||    
T  15262927 aaatacaaaggagtgataggatataataggtaaaagaaataatttatcatattctattggtgcatcaaacaaaagattaaaacaagata 15263015  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 1344695 - 1344660
Alignment:
Q  43 gaggaagaagaagatgataggaatggatgaatgatt 78  Q
    |||||||||||||||||||||||||||| |||||||    
T  1344695 gaggaagaagaagatgataggaatggataaatgatt 1344660  T

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Target: scaffold0667 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 591 - 739
Alignment:
Q  87 gggtaaaataaagattcattttgccaaaccgaatatgttaattttaacatagccaatatttaggatgagaaatacaaaggagtgataggataagataagt 186  Q
    ||||||||||  |||| |||||| |||| ||  || ||||||||||||  |||| | | |||| ||   |||||||||||||||||| ||||  ||||||    
T  591 gggtaaaatagggatttattttgtcaaatcgggtaggttaattttaacccagcctaaacttagaatagaaaatacaaaggagtgatatgatagaataagt 690  T
Q  187 aaaaggaataatttatcatatatcattgttgtagcaaacagaagattga 235  Q
    ||||||| ||||||||| ||| |||| |||| | |||||||||||||||    
T  691 aaaaggattaatttatcttatctcatcgttgcaccaaacagaagattga 739  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 33819812 - 33819863
Alignment:
Q  156 aaatacaaaggagtgataggataagataagtaaaaggaataatttatcatat 207  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  33819812 aaatacaaaggagtgataggatatgataagttaaaggaataatttgtcatat 33819863  T

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