View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_15 (Length: 472)
Name: NF14395_low_15
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 31264265 - 31263819
Alignment:
| Q |
10 |
gtgagaagaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgtaatattggaaagat |
109 |
Q |
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|||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264265 |
gtgacaagaacactcaaatgcaaatttgtcgcaacagaagtctgaattcaaggaaagttgaaagacatggaatagagcatctccgtaatattggaaagat |
31264166 |
T |
|
| Q |
110 |
ggtaatttatccgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcctcaaa |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264165 |
ggtaatttatccgatgagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcctcaaa |
31264066 |
T |
|
| Q |
210 |
ccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgtcatcgttaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264065 |
ccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgtcatcgttaa |
31263966 |
T |
|
| Q |
310 |
tcaattgtatagatcatatcgcaattaagcgtaaacaataattgttgaaaatttattaagttgcattaatattattaaagttttctattgtatcaccgtc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263965 |
tcaattgtatagatcatatcgcaattaagcgtaaacaataattgttgaaaatttattaagttgcattaatattattaaagttttctattgtatcaccgtc |
31263866 |
T |
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| Q |
410 |
ttaactttaatgttgtgtggtcatcaaaactactgatgaataatttt |
456 |
Q |
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| T |
31263865 |
ttaactttaatgttgtgtggtcatcaaaactactgatgaataatttt |
31263819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 12212663 - 12212406
Alignment:
| Q |
16 |
agaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaa |
114 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| | || ||||| | | |
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| T |
12212663 |
agaacaatcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactagacagatgatga |
12212564 |
T |
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| Q |
115 |
tttatccgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcc-tcaaacctt |
213 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||| | ||||| |
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| T |
12212563 |
tttatccgatgagtaataatttatatttatggttctcaatgttatgact--atctctatc-----------tattgttaggactatctccattaaacc-a |
12212478 |
T |
|
| Q |
214 |
catctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatc |
285 |
Q |
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| T |
12212477 |
catgtattgtaccatttcaactatccatctatataattattctaccttggtttttatatttcctcatccatc |
12212406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 13814928 - 13815186
Alignment:
| Q |
16 |
agaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaa |
114 |
Q |
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|||||| ||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| | |
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| T |
13814928 |
agaacaatcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggatagatggtga |
13815027 |
T |
|
| Q |
115 |
tttatccgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcc-tcaaacctt |
213 |
Q |
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|||||| ||| |||||||||||||| |||||| ||||| |||||||||| ||||| ||| ||||||||||||||||||| | ||||| |
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| T |
13815028 |
tttatctgatgagtaataatttatacttatggttctcagtgttatgact--atctccatc-----------tattgttaggactatctccattaaacc-a |
13815113 |
T |
|
| Q |
214 |
catctattgtaccatttcatctatcattctatctaattgttctacattggttt-ttatatttcctcatgcatc |
285 |
Q |
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||| ||||||||||||||| ||||| ||||| ||| |||||||| ||||||| |||||||||||||| |||| |
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| T |
13815114 |
catgtattgtaccatttcaactatccatctatataaatgttctaccttggtttgttatatttcctcatccatc |
13815186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 22144846 - 22144589
Alignment:
| Q |
16 |
agaacactcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaa |
114 |
Q |
| |
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|||||| ||||||||||||| ||||||||| | |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| | |
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| T |
22144846 |
agaacaatcagatgcaaattcgtctcaacaaatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggacagatggtga |
22144747 |
T |
|
| Q |
115 |
tttatccgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcc-tcaaacctt |
213 |
Q |
| |
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|||||||||| ||||||||||||||||||||| || ||||||||||||| ||||| ||| ||||||||||||||||||| | ||||| |
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| T |
22144746 |
tttatccgatgagtaataatttatatttatggttcgcaatgttatgact--atctccatc-----------tattgttaggactatctccattaaacc-a |
22144661 |
T |
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| Q |
214 |
catctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatc |
285 |
Q |
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||| ||||||||||||||| ||||| ||||| |||||||||||| || |||| ||||| ||||||| |||| |
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| T |
22144660 |
catgtattgtaccatttcaactatccatctatataattgttctaccttagtttatatatgtcctcatccatc |
22144589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 15852247 - 15852342
Alignment:
| Q |
205 |
tcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgt |
300 |
Q |
| |
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||||||| ||| ||||||||||||||| ||||| | ||| |||||||||||| |||||||||||||||| |||| |||| |||||||| ||||| |
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| T |
15852247 |
tcaaacccacatgtattgtaccatttcaactatccatgtatataattgttctaccttggtttttatatttcatcatccatccgtttataccattgt |
15852342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 15852351 - 15852407
Alignment:
| Q |
375 |
ttaatattattaaagttttctattgtatcaccgtcttaactttaatgttgtgtggtc |
431 |
Q |
| |
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|||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||| |
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| T |
15852351 |
ttaacattattaaatttttctattgtatgatagtcttaactttaatgttgtgtggtc |
15852407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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