View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_18 (Length: 458)
Name: NF14395_low_18
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 119 - 442
Target Start/End: Original strand, 28831884 - 28832212
Alignment:
| Q |
119 |
cgactctattatcaattgaaaaggaataaaataaatcaattatgttcacttaataaa----tgtttttatattctaaaacatccnnnnnnnntatattca |
214 |
Q |
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| T |
28831884 |
cgactctattatcaattgaaaaggaataaaataaatcaattatgttcacttaataaaaccatgtttttatattctaaaacatccaaaaaaaaaa-attca |
28831982 |
T |
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| Q |
215 |
tttttctgaaatatattatgagttttaaaagggcttcatattaaagtatgtatgacgccttaatatgtgttgg-ccgactctaagtagatctctatcagg |
313 |
Q |
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| T |
28831983 |
tttttctaaaatatattatgagttttaaaagggcttcatattaaagtatgtatgacgccttaatatgtgtcgggccgactctgagtagatctctatcaga |
28832082 |
T |
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| Q |
314 |
tttatcaaatattttgatttacattcaacttaaaaaacgcaacaattttatcattcattgtttgtcatgtccaattcgagatatca-tcnnnnnnnatag |
412 |
Q |
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|||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
28832083 |
tttatcaaatattttgatttacattcaattttaaaaacgtaacaattttatcattcattgtttgtcatgtccaattcgagatatcattttttttttatag |
28832182 |
T |
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| Q |
413 |
gagcataaaataaatatttaatttacatat |
442 |
Q |
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|| |||| |||||||||||||||||||||| |
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| T |
28832183 |
gaccatacaataaatatttaatttacatat |
28832212 |
T |
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