View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_19 (Length: 446)
Name: NF14395_low_19
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 43713291 - 43712879
Alignment:
| Q |
16 |
tgatattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatgagcatagc |
115 |
Q |
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| T |
43713291 |
tgatattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatgagcatagc |
43713192 |
T |
|
| Q |
116 |
gaatggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaggcaaaaagcattaacaagcaatat |
215 |
Q |
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| T |
43713191 |
gaatggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaagcaaaaagcattaacaagcaatat |
43713092 |
T |
|
| Q |
216 |
ttttaaatattttccaaatgacaaagttccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaagcaatccatg |
315 |
Q |
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| T |
43713091 |
ttttaaatattttccaaatgacaaagttccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaatccatg |
43712992 |
T |
|
| Q |
316 |
aacaagagaagctatatgtaaggattagtcaaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacga |
415 |
Q |
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| T |
43712991 |
aacaagagaagctatatgtaaggattagtcaaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacga |
43712892 |
T |
|
| Q |
416 |
aatttgtgtccct |
428 |
Q |
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| T |
43712891 |
aatttgtgtccct |
43712879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 208 - 428
Target Start/End: Complemental strand, 42572412 - 42572183
Alignment:
| Q |
208 |
agcaatatttttaaatattttccaaatgacaaagt-tccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaag |
306 |
Q |
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| T |
42572412 |
agcaatatttttaaataatttccaaatgacaaaaaatccatactcaagcaac-gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaag |
42572314 |
T |
|
| Q |
307 |
caatccatgaacaagagaagctat-----atgtaaggattagtcaaatccttaaccaagggatttagcttcccctc----ttatttatttattaggatta |
397 |
Q |
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| T |
42572313 |
caatccatgaacaaaagaagctataattaatgtaaggattagtcaaatacttaatcaagggattttgcttctccccttatttatttatttattaggatta |
42572214 |
T |
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| Q |
398 |
tgattccgttagttacgaaatttgtgtccct |
428 |
Q |
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| T |
42572213 |
tgattccattagttaagaaatttgtgtccct |
42572183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 189 - 373
Target Start/End: Complemental strand, 42597667 - 42597480
Alignment:
| Q |
189 |
gaggcaaaaagcattaacaag-caatatttttaaatattttccaaatgacaaag--ttccatactcaagcaaatgtaaactgtgtctgtgtccaagtact |
285 |
Q |
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|||||||||||||| || || || |||||||||||| | | ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||| | |
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| T |
42597667 |
gaggcaaaaagcataaaaaaaacattatttttaaataatattcaaatgacaaaaaattccatactcaagcaaatgtagattgtgt-tgtgtccaagtatt |
42597569 |
T |
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| Q |
286 |
tcccaggaaggaaacagtaagcaatccatgaacaagagaagcta-----tatgtaaggattagtcaaatccttaaccaagggatttagcttcc |
373 |
Q |
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| || |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
42597568 |
t----ggcaggaaacattaagcaatccatgaaaaagagaagctagaattcatgtaaggattagtcaaatccttaaccgagggatttaccttcc |
42597480 |
T |
|
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