View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_2 (Length: 731)
Name: NF14395_low_2
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 726
Target Start/End: Original strand, 35052629 - 35053354
Alignment:
| Q |
1 |
aagaataagaaaaatcaaattgaaaaagataacccatttgaatcattttgctgtgttttgatggtacaacatatttaataaaacaggatttagacaggta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052629 |
aagaataagaaaaatcaaattgaaaaagataacctatttgaatcattttggtgtgttttgatggtacaacatatttaataaaacaggatttagacaggta |
35052728 |
T |
|
| Q |
101 |
agtctatctcatagcggtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052729 |
agtctatctcatagcggtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaaatg |
35052828 |
T |
|
| Q |
201 |
agaaaaacaagcatttgtagctgaacagtatttttcatatcactgnnnnnnnnn-ttgtctgatgaaaatagcagcaacggtttacatcaaa-agaaaag |
298 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
35052829 |
agaaaaacaagcatttgtagctgagcagtatttttcatatcaccgaaaaaaaaaattgtctgatgaaaatagcagcaatggtttacatcaaacagaaaag |
35052928 |
T |
|
| Q |
299 |
ataaagacaacattgtgtagcatgcaagaaatggtataattttccaaaatgtgcannnnnnnagtagtcacctaccatatgtaaaaggacacaacatcac |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||| |
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|
| T |
35052929 |
ataaagacaacattgtgtagcatgcaagaaatggtataattttccaaattgtgcatttttt-agtagtcacctaccatgtgtaaaaggacacaacctcac |
35053027 |
T |
|
| Q |
399 |
aaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaaccacagaggagattcataagtgtaagggaaggattgaattg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
35053028 |
aaattattccattatatataatgttaatgtgcttggtc-atacttaagtattgatcaaaccatagaggagattcataagtgtaagggaaagattgaattg |
35053126 |
T |
|
| Q |
499 |
acaaagaaaaattttaattgcttaagagaatggagccacgttttctagcaannnnnnnggtagctctttcatctccactctttgttcagtccttggtgcg |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35053127 |
acaaagaaaaattttaattgcttaagagaatggagccacgttttctagcaatttttttggtagctctttcatctccactctttgttcagtccttggtgcg |
35053226 |
T |
|
| Q |
599 |
tcattataattttagtgtaagtacacttcttatgctcaatttttcaggttcattaaaaatgtgacaataattaataagaaaaaaggttggcataaaagca |
698 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35053227 |
tcattacaattttagtgtaagtacacttcttatgctcaatttttcaggttcattaaaaatgtgacaataattagtaagaaaaaaggttggcataaaagca |
35053326 |
T |
|
| Q |
699 |
ttatcaaaatagtgcctcctatgctact |
726 |
Q |
| |
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||||||||||||||| |||||||||||| |
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|
| T |
35053327 |
ttatcaaaatagtgcttcctatgctact |
35053354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 3 - 719
Target Start/End: Original strand, 35068550 - 35069270
Alignment:
| Q |
3 |
gaataagaaaaatcaaattgaaaaagataacccatttgaatcattttgctgtgttttgatggtacaacatatttaataaaacaggatttagacaggtaag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
35068550 |
gaataagaaaaatcaaattgaaaaagataacccatttgaatcattttggtgtgttttgatggtacaacatatttaataaaacaggatttggacaggtaag |
35068649 |
T |
|
| Q |
103 |
tctatctcatagcggtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaaatgag |
202 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35068650 |
tctatctcctagcagtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaaatgag |
35068749 |
T |
|
| Q |
203 |
aaaaacaagcatttgtagctgaacagtatttttcatatcactgnnnnnnnnnttgtctgatgaaaatagcagcaacggtttacatcaaaagaaaagataa |
302 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35068750 |
aaaaacaagtatttgtagctgagcagtatttttcatatcactgaaaaaaaa-ttgtctgatgaaaatagcagcaacggtttacatcaaaagaaaagataa |
35068848 |
T |
|
| Q |
303 |
agacaacattgtgtagcatgcaagaaatggtataattttccaaaatgtgcannnnnnnagtagtcacctaccatatgtaaaaggacacaacatcacaaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
35068849 |
agacaacattgtgtagcatgcaagaaatggtataattttccaaattgtgcatttttttagtagtcacctaccatgtgtaaaaggacacagcatcacaaat |
35068948 |
T |
|
| Q |
403 |
tattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaaccacagaggagattcataagtgtaagggaaggattgaattgacaa |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35068949 |
tattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagaggagattaataagtgtaagggaaggattgaattgac-- |
35069046 |
T |
|
| Q |
503 |
agaaaaattttaattgcttaagagaatggagccacgttttctagcaannnnnnnggtagctctttcatctccactctttgttcagtccttggtgcgtcat |
602 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35069047 |
agaaaaaattcaattgcttaagagaatggagccacgttttctagcaatttttttggtagctctttcatttccactctttgttcagtccttggtgcgtcat |
35069146 |
T |
|
| Q |
603 |
tataattttagtgtaagtacacttcttatgctcaatttttcaggttcatt-------aaaaatgtgacaataattaataagaaaaaaggttggcataaaa |
695 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| || ||||||||| |||| ||||| |||||| |
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| T |
35069147 |
tacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaagtgaaaaacgtgacattagttaataagagaaaaagttggaataaaa |
35069246 |
T |
|
| Q |
696 |
gcattatcaaaatagtgcctccta |
719 |
Q |
| |
|
|||||||||||||| ||| ||||| |
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|
| T |
35069247 |
gcattatcaaaataatgcttccta |
35069270 |
T |
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