View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_20 (Length: 441)
Name: NF14395_low_20
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 15178718 - 15178932
Alignment:
| Q |
16 |
attgctaagcataaagtagacattgccttgtcacaaccaccctctc------cttctccttctccatcaccatcttcacacacaaaaaaggtatgtgaca |
109 |
Q |
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| T |
15178718 |
attgctaagcataaagtagacattgccttgtcacaaccaccctctccttctccttctccttctccatcaccatcttcacacacaaaaaaggtatgtgaca |
15178817 |
T |
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| Q |
110 |
aattaataacaaaatttaattgttatgcatcatgaatatgtcacaataaatcttaataaatttttagtttttggttttctaggatttcattgatagattt |
209 |
Q |
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| T |
15178818 |
aattaataacaaaatttaattgttatgcatcatgaatatgtcacaataaatcttaataaatttttagtttttggttttctaggatttcattgatagattt |
15178917 |
T |
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| Q |
210 |
aattgacatataatg |
224 |
Q |
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| T |
15178918 |
aattgacatataatg |
15178932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 231 - 424
Target Start/End: Original strand, 15178959 - 15179153
Alignment:
| Q |
231 |
tcaagcataatcattgagttatattcaaaatatttgactttaattaaaatatgtgatattttgacgatgcaaacaattttacgttgcgaatatatctaaa |
330 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15178959 |
tcaatcataatcattgagttatattcaaaatatttgactttaattaaaatatgtgattgtttgatgatgcaaacaattttacgttgcgaatatatctaaa |
15179058 |
T |
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| Q |
331 |
ttacaataacaatatcattatctgcatgtgtttttgg-tttgaaattgaattagagtggaagagtggtgtacccaattgaatatggtgcagatcc |
424 |
Q |
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| T |
15179059 |
ttacaataacaatctcattatctgcatgtgtttttggttttgaaattgaactagagtggaagagtggtgtacccaattgaatatggtgcagatcc |
15179153 |
T |
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