View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_21 (Length: 420)
Name: NF14395_low_21
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 20294607 - 20295007
Alignment:
| Q |
1 |
gagttacctttggatgactttttccctgatgataggctgatagcatccgtgaagtctgtggcaccttggtatgctgacttcgacaactaccttgccgcta |
100 |
Q |
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| T |
20294607 |
gagttacctttggatgactttttccctgatgataggctgatagcatccgtgaagtctgtggcaccttagtatgctgacttcgacaactaccttgccgcta |
20294706 |
T |
|
| Q |
101 |
gggttcttcctcctaacatggactatcagcggaagaaaaagttcttcaatgatctaaaacaatattactgggatgaacccctccttttcaagtgaggtgc |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20294707 |
gggttctgcctcctaacatggactatcagcggaagaaaaagttcttcaatgatctaaagcaatattactgggatgaacccctccttttcaagtgaggtgc |
20294806 |
T |
|
| Q |
201 |
agacaatatcttccgtcgttgcattatagaggaagaggtcgataatgtccttacatactgtaggccaaaaatataccctatggtgggcaggccagcacgt |
300 |
Q |
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| T |
20294807 |
agacagtatattccgtcgttgcattatagaggaagaggtcgatagtgtccttacctactgtaggccaacaatataccctatggtgggcaggccagcacgt |
20294906 |
T |
|
| Q |
301 |
ccaaaacaacctataagatcctccaagaagggctctaatggcctaatatctttaaggatgttcacgcgtttgttgcaagatgggaccaatggcagtgcac |
400 |
Q |
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| T |
20294907 |
ccaaaacaacctataagatcctccaagaagggctctaatggcctaatatctttaaggatgttcacgcgtttgttgcaagatgggaccaatgccagtgcac |
20295006 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
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| |
|
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| T |
20295007 |
a |
20295007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 2 - 388
Target Start/End: Complemental strand, 19808271 - 19807890
Alignment:
| Q |
2 |
agttacctttggatgactttttccctgatgataggctgatagcatccgtgaagtctgtggcaccttggtatgctgacttcgacaactaccttgccgctag |
101 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||| | |||||||||||||||| | |
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| T |
19808271 |
agttacctttagatgactctttccctgatgataggttgatagcatccgtaaagactgtggcaccctggtatgctgactttgtcaactaccttgccgctgg |
19808172 |
T |
|
| Q |
102 |
ggttcttcctcctaacatggactatcagcggaagaaaaagttcttcaatgatctaaaacaatattactgggatgaacccctccttttcaagtgaggtgca |
201 |
Q |
| |
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||| || || ||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
19808171 |
ggtcctaccccctgacatggactatcaacggaagaaaaagttcttcaatgatcttaagcaatattactgggatgagcccctccttttcaagcgaggcgca |
19808072 |
T |
|
| Q |
202 |
gacaatatcttccgtcgttgcattatagaggaagaggtcgataatgtccttacatactgtaggccaaaaatataccctatggtgggcaggccagcacgtc |
301 |
Q |
| |
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||| ||||||||||||||||||| ||||||||| ||||| | ||||||||| | ||| || | |||||||||||||| ||||||||||| |
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| T |
19808071 |
gacggtatcttccgtcgttgcattccagaggaagaagtcgagagtgtccttacccattgt----catgcgt-ccccctatggtgggcacgccagcacgtc |
19807977 |
T |
|
| Q |
302 |
caaaacaacctataagatcctccaagaagggctctaatggcctaatatctttaaggatgttcacgcgtttgttgcaagatgggacca |
388 |
Q |
| |
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||||| |||| ||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |
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|
| T |
19807976 |
taaaacggcctacaagatcctccaagcaggactctactggcctaatatctttaaggatgtccacgcgttcgttgcgagatgtgacca |
19807890 |
T |
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