View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_28 (Length: 365)
Name: NF14395_low_28
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 54794393 - 54794723
Alignment:
| Q |
20 |
gaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagttta |
119 |
Q |
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| T |
54794393 |
gaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagttta |
54794492 |
T |
|
| Q |
120 |
taagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaa |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54794493 |
taagttaaactagtagctaatagactatagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagtaagcgagctaa |
54794592 |
T |
|
| Q |
220 |
ctgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtc |
319 |
Q |
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| T |
54794593 |
ctgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactaatttacaagtttgtcaaataagataagtctatgtc |
54794692 |
T |
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| Q |
320 |
aaacaaactcaagcttcacacctgacctatg |
350 |
Q |
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| T |
54794693 |
aaacaaactcaagcttcacacctgacctatg |
54794723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 52287091 - 52287320
Alignment:
| Q |
20 |
gaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagttta |
119 |
Q |
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| T |
52287091 |
gaaatgattggtttccataaatgagtcaagggtgtgacttgggtcagtttattcacactccattctgtagtatctatttggcaatagtttaagtagttta |
52287190 |
T |
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| Q |
120 |
taagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagctaa |
219 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
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| T |
52287191 |
taagttaaactagtagctaatggactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagttagcaaactaa |
52287290 |
T |
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| Q |
220 |
ctgatcaacataaaatgacataaaagatat |
249 |
Q |
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| T |
52287291 |
ctgatcaacataaaatgacataaaagatat |
52287320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 52287391 - 52287484
Alignment:
| Q |
257 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
350 |
Q |
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| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatg |
52287484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 802311 - 802468
Alignment:
| Q |
92 |
tctatttggcaatagtttaagtagtttataagttaaactagtagcta--atagactacagttgaaagtttataaatgaaaagctagttgattgatattca |
189 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
802311 |
tctatttggcaatagtgtaagtagtttataagttaa-ctaatagcaactatagattatagttgaaagtttataaatgaaaagctagttgattgcaattca |
802409 |
T |
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| Q |
190 |
agtggttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
249 |
Q |
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| T |
802410 |
agtggttgttagaattaattggcgaactaactgataaacat-aaatgacatgaaagatat |
802468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 802253 - 802309
Alignment:
| Q |
20 |
gaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcaca |
76 |
Q |
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||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||||||| |
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| T |
802253 |
gaaatgattggtttccataattgagttaagggtatgacttgggtcaagttattcaca |
802309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
148 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
207 |
Q |
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| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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