View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_29 (Length: 361)
Name: NF14395_low_29
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 44767345 - 44767014
Alignment:
| Q |
16 |
cacagagggcagagagtgctggttcacctgttctataatagttttaggaaaatagatggagaaaagttctccttttagacacatt--attgcaatgaata |
113 |
Q |
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| T |
44767345 |
cacagagggcagagagtgctggttcacctgttctataatagttttaggaaaatagatggagaaaagttctccttttagacacattttattgcaatgaata |
44767246 |
T |
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| Q |
114 |
taattgtaggaaatcaatatgaaggaaccaggcaccttttattatctatcatttttctcttcaaccnnnnnnnaaaaatttctcttttaagttaagtgtc |
213 |
Q |
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| T |
44767245 |
taattgtaggaaatcaatatgaaggaaccaggcaccttttattatctatcatttttctcttcaacctttttttaaaaatttctcttttaagttaagtgtc |
44767146 |
T |
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| Q |
214 |
ttccattttatttaggctggtttcctttacatatatgttgtattctgtagtgtatataaaatcatggatataacttcattattttcttggttcttttttg |
313 |
Q |
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| T |
44767145 |
ttccattttatttaggctggtttcctttacatatatgttgtattctgtagtgtatataaaatcatggatataacttcattattttcttggttcttttttg |
44767046 |
T |
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| Q |
314 |
tttccctctgttgcgctttgttttattatcac |
345 |
Q |
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| T |
44767045 |
tttccctctgttgcgctttgttttattatcac |
44767014 |
T |
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