View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14395_low_3 (Length: 646)

Name: NF14395_low_3
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14395_low_3
NF14395_low_3
[»] chr8 (4 HSPs)
chr8 (144-277)||(37193273-37193406)
chr8 (144-277)||(37182143-37182274)
chr8 (58-90)||(3193523-3193555)
chr8 (150-226)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (144-278)||(21105366-21105500)
chr3 (144-210)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (146-273)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (146-273)||(10233990-10234117)
chr6 (203-271)||(4619835-4619903)
[»] chr7 (5 HSPs)
chr7 (513-603)||(25451079-25451169)
chr7 (418-479)||(25605781-25605842)
chr7 (418-479)||(25625422-25625483)
chr7 (520-564)||(25605875-25605919)
chr7 (520-564)||(25625516-25625560)
[»] chr5 (1 HSPs)
chr5 (418-479)||(20436001-20436062)
[»] chr4 (1 HSPs)
chr4 (418-479)||(5332143-5332204)
[»] chr2 (1 HSPs)
chr2 (56-90)||(17854474-17854508)
[»] scaffold0288 (1 HSPs)
scaffold0288 (203-271)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 144 - 277
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q  144 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 243  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  244 tcaccatggttttgtgagtttccaaacacaggct 277  Q
    ||||| ||||||  ||||||||||||||||||||    
T  37193306 tcaccgtggtttcatgagtttccaaacacaggct 37193273  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 144 - 277
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q  144 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 243  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||  ||  |||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt 37182177  T
Q  244 tcaccatggttttgtgagtttccaaacacaggct 277  Q
    ||||| || |||  ||||||||||||||||||||    
T  37182176 tcaccgtgttttcatgagtttccaaacacaggct 37182143  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 3193555 - 3193523
Alignment:
Q  58 ttaaataatttagagcaactagtttaatctatt 90  Q
    |||||||| ||||||||||||||||||||||||    
T  3193555 ttaaataaattagagcaactagtttaatctatt 3193523  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q  150 ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt 226  Q
    |||||||||||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||| |  |||||||||    
T  29461186 ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt 29461262  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q  144 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 243  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  244 tcaccatggttttgtgagtttccaaacacaggcta 278  Q
    ||||||||||||||| ||||| |||||||| ||||    
T  21105400 tcaccatggttttgttagttttcaaacacatgcta 21105366  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  144 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 210  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

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Target: scaffold0495 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q  146 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 245  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  246 accatggttttgtgagtttccaaacaca 273  Q
    ||||||||||||||||||| ||||||||    
T  10818 accatggttttgtgagttttcaaacaca 10845  T

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Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q  146 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 245  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  246 accatggttttgtgagtttccaaacaca 273  Q
    ||||||||||||||||||| ||||||||    
T  10234090 accatggttttgtgagttttcaaacaca 10234117  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 4619903 - 4619835
Alignment:
Q  203 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 271  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  4619903 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 4619835  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 513 - 603
Target Start/End: Original strand, 25451079 - 25451169
Alignment:
Q  513 aaagccaagtgattgcttgcactggcgatagacgctttcaggtttgtcttgccaagaatgaagcagcagactctaggatgaagttaggata 603  Q
    ||||||||||||||||||||||    ||| | ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  25451079 aaagccaagtgattgcttgcacctatgatgggcgctttcaggtttgtcttgccaagaataaagcagaagactctaggatgaagtcaggata 25451169  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 25605781 - 25605842
Alignment:
Q  418 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 479  Q
    |||||| ||| |||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  25605781 ttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaact 25605842  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 25625422 - 25625483
Alignment:
Q  418 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 479  Q
    ||||||| || |||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  25625422 ttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgttggtgcaact 25625483  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 25605875 - 25605919
Alignment:
Q  520 agtgattgcttgcactggcgatagacgctttcaggtttgtcttgc 564  Q
    |||||||||||||| ||| ||| || |||||||||||||||||||    
T  25605875 agtgattgcttgcattggtgatggaagctttcaggtttgtcttgc 25605919  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 25625516 - 25625560
Alignment:
Q  520 agtgattgcttgcactggcgatagacgctttcaggtttgtcttgc 564  Q
    |||||||||||||| ||| ||| || |||||||||||||||||||    
T  25625516 agtgattgcttgcattggtgatggaagctttcaggtttgtcttgc 25625560  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 20436001 - 20436062
Alignment:
Q  418 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 479  Q
    ||||| |||| |||||||| ||| |||||||||| |||||||||||||||| || |||||||    
T  20436001 ttgtttacagttatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaact 20436062  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 5332143 - 5332204
Alignment:
Q  418 ttgttgacagatatgagtttcaattgcaatatggctcaattggatggtctgctgttgcaact 479  Q
    ||||| |||| |||||||| ||| |||||||||| |||||||||||||||| || |||||||    
T  5332143 ttgtttacagttatgagttccaaatgcaatatggttcaattggatggtctgttggtgcaact 5332204  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 17854508 - 17854474
Alignment:
Q  56 aattaaataatttagagcaactagtttaatctatt 90  Q
    |||||||||| ||||||||||||||||||||||||    
T  17854508 aattaaataaattagagcaactagtttaatctatt 17854474  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 969 - 1037
Alignment:
Q  203 tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca 271  Q
    |||||||||||||  |||||||||  ||| || || |||||||||| ||||||||| ||| ||||||||    
T  969 tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca 1037  T

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