View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_37 (Length: 313)
Name: NF14395_low_37
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_37 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 38244809 - 38244497
Alignment:
| Q |
1 |
gtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38244809 |
gtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcattgg |
38244710 |
T |
|
| Q |
101 |
gaacatgggtatggtccatgtttcttgtgtggtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244709 |
gaacatgggtatggtccatgtttctcgtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgt |
38244610 |
T |
|
| Q |
201 |
taatatccccaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaagt |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
38244609 |
taatatccctaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagt |
38244510 |
T |
|
| Q |
301 |
agtagaagtattc |
313 |
Q |
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||||||||||||| |
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| T |
38244509 |
agtagaagtattc |
38244497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 38261109 - 38260812
Alignment:
| Q |
1 |
gtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38261109 |
gtatctcttttttctgtcttcttcactttcgaacttgcagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcatttt |
38261010 |
T |
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| Q |
101 |
gaacatgggtatggtccatgtttcttgtgtggtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||| || |||| ||||||| |
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| T |
38261009 |
gaacatgggtatggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgt |
38260910 |
T |
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| Q |
201 |
taatatccccaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaag |
299 |
Q |
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||| || ||||||||||| ||| | | ||| || ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
38260909 |
taacat-cccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaag |
38260812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 47285581 - 47285733
Alignment:
| Q |
1 |
gtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgg |
100 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||| ||||| ||||| ||| | | || ||||||||| | |
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| T |
47285581 |
gtatctcttttttctctcttcttcactttcagtcttgtagtgacttgat---acatgagcagcgaatttctgtgatgttgctattactttgttgcactct |
47285677 |
T |
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| Q |
101 |
gaacatgggtatggtccatgtttcttgtgtggtaggctgtggattttaccatcatc |
156 |
Q |
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||||| | ||| ||||||||||| ||||| ||||| ||||||||| |||||||||| |
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| T |
47285678 |
gaacacgtgtacggtccatgtttattgtgaggtagactgtggattctaccatcatc |
47285733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 47307138 - 47307290
Alignment:
| Q |
1 |
gtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgg |
100 |
Q |
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||||||||||||| | |||||||||||||| |||||||||| |||||| ||||| |||||||||||||||| ||| | | || |||||| || | |
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| T |
47307138 |
gtatctcttttttttctcttcttcactttctgacttgtagtgtattgatg---catgactagcaaatttttgtgatgttgctagtactttgttacacttt |
47307234 |
T |
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| Q |
101 |
gaacatgggtatggtccatgtttcttgtgtggtaggctgtggattttaccatcatc |
156 |
Q |
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| ||| | |||||||||| ||| ||||||| ||| |||||| || |||||||||| |
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| T |
47307235 |
ggacacgtatatggtccatttttattgtgtgatagactgtgggttctaccatcatc |
47307290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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