View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_4 (Length: 635)
Name: NF14395_low_4
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 31663423 - 31663833
Alignment:
| Q |
1 |
taagataagtattatatggaagaggtagagacctgttgcattcttgcagagatatattcatagtgttcattcagttatgcttgtaggagataagttactt |
100 |
Q |
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| T |
31663423 |
taagataagtattatatggaagaggtagagacctgttgcattcttgcagagatatattcatagtgttcattcagttatgcttgtaggagataagttactt |
31663522 |
T |
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| Q |
101 |
tttgtccatcataaatcttctgagtaatctacattcatcaaggtaatacaaaattacaacaagaaatgcatatctacatatacatatttagctgcctggt |
200 |
Q |
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| T |
31663523 |
tttgtccatcataaatcttctgagtaatctacattcatcaaggtaatacaaaattacaacaagaaatgcatatctacatatacatatttagctgcctggt |
31663622 |
T |
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| Q |
201 |
ggtaaaaaattgaaccttgagtcgttgatgtaaataatgacagtttccactatcaaagaatcttgttctggcaccagcagcaacctacccaatcaaacac |
300 |
Q |
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| T |
31663623 |
ggtaaaaaattgaaccttgagtcgttgatgtaaataatgacagttttcactatcaaagaatcttgttctggcaccagcagcaacctacccaatcaaacac |
31663722 |
T |
|
| Q |
301 |
aagaaacatgagagaatttgatataaaaagtgctacaaaaggacttgttataggattagaattaaaaacaccaaaaagtaaatcattttccttctgccaa |
400 |
Q |
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| T |
31663723 |
aagaaacatgagagaatttgatataaaaagtgctacaaaaggacttattataggattagaattaaaaacaccaaaaagtaaatcattttccttctgccaa |
31663822 |
T |
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| Q |
401 |
ttaggataagt |
411 |
Q |
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| T |
31663823 |
ttaggataagt |
31663833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 434 - 618
Target Start/End: Original strand, 31663830 - 31664014
Alignment:
| Q |
434 |
aagtaaaccattgacttttgtatgacttgaagctagtgaactgaatgaaaagagttaaccctaaattcttgactcagtggttcacttgaatcatcttcat |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663830 |
aagtaaaccattgacttttgtatgacttgaagctagtgaactgaatgaaaagagttaaccctaaattcttgactcagtggttcacttgaatcatcttcat |
31663929 |
T |
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| Q |
534 |
tctcattgttatcttcagaagttggaatgtcaaatctaccctcaaatttcatactaaacattagatcttcccagaacccttcatc |
618 |
Q |
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| T |
31663930 |
tctcattgttatcttcagaagttggaatgtcaaatctaccctcaaatttcatactaaacattagatcttcccagaacccttcatc |
31664014 |
T |
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