View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_41 (Length: 284)
Name: NF14395_low_41
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 30386736 - 30386848
Alignment:
| Q |
12 |
atgaagaaatgaagtaccacatgtcaaattgttccaataattttgtcacaacacaagtcagagagaatttcccacatcttctaaaagatacgactagatt |
111 |
Q |
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| T |
30386736 |
atgaagaaatgaagtaccacatgtcaaattgttccaataattttgtcacaacacaagtcagagagaatttcccacatcttctaaaagatacgactagatt |
30386835 |
T |
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| Q |
112 |
ttggggaccttac |
124 |
Q |
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| T |
30386836 |
ttggggaccttac |
30386848 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 30386928 - 30386990
Alignment:
| Q |
204 |
tttggtggaagtgttatggtgcacgtcatatagttgtagtttaactaaattttgtgtggctaa |
266 |
Q |
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| T |
30386928 |
tttggtggaagtgttatggtgcacgtcatatagttgtagtttaactaaattttgtgtggctaa |
30386990 |
T |
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